Difference between revisions of "Tiso gene 7719"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-11...")
(Created page with "Category:Gene == Gene Tiso_gene_7719 == * right end position: ** 5158 * transcription direction: ** POSITIVE * left end position: ** 2025 * centisome position: ** 18.62069...")
 
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] ==
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== Gene Tiso_gene_7719 ==
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* taxonomic range:
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-1118]
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** 5158
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1217 TAX-1217]
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* transcription direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** POSITIVE
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* common name:
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* left end position:
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** partial TCA cycle (obligate autotrophs)
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** 2025
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* centisome position:
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** 18.62069   
 
* Synonym(s):
 
* Synonym(s):
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** TCA cycle VI (obligate autotrophs)
 
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''9''' reactions found over '''11''' reactions in the full pathway
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* Reaction: [[RXN-15556]]
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* [[ACONITATEDEHYDR-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Assignment: ec-number
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*** [[Tiso_gene_13007]]
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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*** [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** [[orthology-synechocystis]]
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* [[PWY-7511]]
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* [[ACONITATEHYDR-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13007]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[ASPAMINOTRANS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_17718]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_13538]]
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*** [[Tiso_gene_15680]]
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*** [[Tiso_gene_17809]]
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*** [[Tiso_gene_12889]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[CITSYN-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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−
** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLUTDEHYD-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_2581]]
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*** [[Tiso_gene_1154]]
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*** [[Tiso_gene_11511]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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−
*** [[Tiso_gene_10809]]
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−
** 4 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[manual-primary_network]]
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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−
** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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−
*** [[manual-primary_network]]
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−
*** [[orthology-creinhardtii]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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−
*** [[Tiso_gene_15846]]
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−
*** [[Tiso_gene_11866]]
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−
** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14970 RXN-14970]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1118}}
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{{#set: right end position=5158}}
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{{#set: taxonomic range=TAX-1217}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: left end position=2025}}
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{{#set: common name=partial TCA cycle (obligate autotrophs)}}
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{{#set: centisome position=18.62069    }}
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{{#set: common name=TCA cycle VI (obligate autotrophs)}}
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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{{#set: reaction found=9}}
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{{#set: pathway associated=PWY-7511}}
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{{#set: total reaction=11}}
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−
{{#set: completion rate=82.0}}
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Latest revision as of 19:05, 21 March 2018

Gene Tiso_gene_7719

  • right end position:
    • 5158
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2025
  • centisome position:
    • 18.62069
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7719&oldid=39389"