Difference between revisions of "Tiso gene 5063"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Gene == Gene Tiso_gene_5063 == * right end position: ** 6847 * transcription direction: ** POSITIVE * left end position: ** 5221 * centisome position: ** 37.43189...")
 
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] ==
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== Gene Tiso_gene_5063 ==
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* taxonomic range:
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** 6847
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* common name:
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* transcription direction:
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** C4 photosynthetic carbon assimilation cycle, NAD-ME type
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** POSITIVE
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* left end position:
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** 5221
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* centisome position:
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** 37.43189   
 
* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, NAD-ME type
 
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''7''' reactions found over '''9''' reactions in the full pathway
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* Reaction: [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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* [[1.1.1.39-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 associated gene(s):
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*** Assignment: ec-number
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*** [[Tiso_gene_12896]]
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* Reaction: [[PHOSPHATIDATE-PHOSPHATASE-RXN]]
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*** [[Tiso_gene_6675]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_12200]]
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*** Assignment: ec-number
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** 3 reconstruction source(s) associated:
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* Reaction: [[RXN-16030]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** [[orthology-esiliculosus]]
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* Reaction: [[RXN-16121]]
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* [[ALANINE-AMINOTRANSFERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 2 associated gene(s):
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*** Assignment: ec-number
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*** [[Tiso_gene_5959]]
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* Reaction: [[RXN-17730]]
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*** [[Tiso_gene_10957]]
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** Source: [[annotation-in-silico_annotation]]
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** 5 reconstruction source(s) associated:
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*** Assignment: ec-number
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*** [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** [[orthology-athaliana]]
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* [[PWY-7782]]
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*** [[annotation-in-silico_annotation]]
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* [[TRIGLSYN-PWY]]
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*** [[manual-primary_network]]
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* [[PWY-6453]]
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*** [[orthology-esiliculosus]]
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* [[ASPAMINOTRANS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_17718]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_13538]]
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*** [[Tiso_gene_15680]]
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*** [[Tiso_gene_17809]]
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*** [[Tiso_gene_12889]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-13697]]
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** 6 associated gene(s):
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*** [[Tiso_gene_13538]]
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*** [[Tiso_gene_12889]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_17718]]
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−
*** [[Tiso_gene_17809]]
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−
*** [[Tiso_gene_15680]]
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** 3 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
* [[RXN-13698]]
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−
** 2 associated gene(s):
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−
*** [[Tiso_gene_10957]]
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−
*** [[Tiso_gene_5959]]
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−
** 3 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
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*** [[Tiso_gene_18927]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_7660]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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{{#set: right end position=6847}}
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, NAD-ME type}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=C4 photosynthesis, NAD-ME type}}
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{{#set: left end position=5221}}
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{{#set: reaction found=7}}
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{{#set: centisome position=37.43189    }}
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{{#set: total reaction=9}}
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{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN|PHOSPHATIDATE-PHOSPHATASE-RXN|RXN-16030|RXN-16121|RXN-17730}}
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{{#set: completion rate=78.0}}
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{{#set: pathway associated=PWY-7782|TRIGLSYN-PWY|PWY-6453}}

Latest revision as of 19:05, 21 March 2018

Gene Tiso_gene_5063

  • right end position:
    • 6847
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5221
  • centisome position:
    • 37.43189
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5063&oldid=39432"