Difference between revisions of "PWY-7357"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** tryptophan_synthase_(al...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** tryptophan_synthase_(alpha_beta_chains)
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** thiamine formation from pyrithiamine and oxythiamine (yeast)
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.20 EC-4.2.1.20]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''6''' reactions in the full pathway
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[GAP]][c]
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* [[PYRIMSYN3-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 L-serine[c] '''=>''' 1 H2O[c] '''+''' 1 L-tryptophan[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
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*** [[Tiso_gene_2159]]
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*** [[Tiso_gene_16224]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17192]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_2160]]
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* Gene: [[Tiso_gene_4604]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[THI-P-SYN-RXN]]
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** Source: [[orthology-athaliana]]
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** 3 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_10320]]
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* Gene: [[Tiso_gene_17207]]
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*** [[Tiso_gene_2159]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_2160]]
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== Pathways  ==
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** 3 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* [[THIAZOLSYN3-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 1 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_3173]]
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* Category: [[manual]]
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** 1 reconstruction source(s) associated:
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** Source: [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* Category: [[annotation]]
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== Reaction(s) not found ==
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=OHMETPYRKIN-RXN OHMETPYRKIN-RXN]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14857 RXN-14857]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14858 RXN-14858]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
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{{#set: common name=thiamine formation from pyrithiamine and oxythiamine (yeast)}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
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{{#set: total reaction=6}}
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* UNIPROT:
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P11081 P11081]
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** [http://www.uniprot.org/uniprot/P14671 P14671]
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** [http://www.uniprot.org/uniprot/P13228 P13228]
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** [http://www.uniprot.org/uniprot/P18284 P18284]
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** [http://www.uniprot.org/uniprot/P43759 P43759]
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** [http://www.uniprot.org/uniprot/O84172 O84172]
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** [http://www.uniprot.org/uniprot/P11080 P11080]
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** [http://www.uniprot.org/uniprot/P16608 P16608]
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** [http://www.uniprot.org/uniprot/P18285 P18285]
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** [http://www.uniprot.org/uniprot/P16706 P16706]
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** [http://www.uniprot.org/uniprot/P12290 P12290]
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** [http://www.uniprot.org/uniprot/P42391 P42391]
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** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
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** [http://www.uniprot.org/uniprot/P12291 P12291]
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** [http://www.uniprot.org/uniprot/P42389 P42389]
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** [http://www.uniprot.org/uniprot/Q60179 Q60179]
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** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
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** [http://www.uniprot.org/uniprot/P07600 P07600]
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** [http://www.uniprot.org/uniprot/P07601 P07601]
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** [http://www.uniprot.org/uniprot/P06561 P06561]
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** [http://www.uniprot.org/uniprot/P56142 P56142]
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** [http://www.uniprot.org/uniprot/P06562 P06562]
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** [http://www.uniprot.org/uniprot/O27696 O27696]
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** [http://www.uniprot.org/uniprot/O28672 O28672]
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** [http://www.uniprot.org/uniprot/O66923 O66923]
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** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
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** [http://www.uniprot.org/uniprot/P43760 P43760]
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** [http://www.uniprot.org/uniprot/P34817 P34817]
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** [http://www.uniprot.org/uniprot/P34816 P34816]
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** [http://www.uniprot.org/uniprot/P17167 P17167]
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** [http://www.uniprot.org/uniprot/P17166 P17166]
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** [http://www.uniprot.org/uniprot/P19868 P19868]
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** [http://www.uniprot.org/uniprot/P19867 P19867]
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** [http://www.uniprot.org/uniprot/P16578 P16578]
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** [http://www.uniprot.org/uniprot/P43283 P43283]
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** [http://www.uniprot.org/uniprot/P43284 P43284]
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** [http://www.uniprot.org/uniprot/Q57011 Q57011]
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** [http://www.uniprot.org/uniprot/P31204 P31204]
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** [http://www.uniprot.org/uniprot/Q01998 Q01998]
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** [http://www.uniprot.org/uniprot/Q01997 Q01997]
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** [http://www.uniprot.org/uniprot/P34793 P34793]
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** [http://www.uniprot.org/uniprot/P42390 P42390]
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** [http://www.uniprot.org/uniprot/P50909 P50909]
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** [http://www.uniprot.org/uniprot/Q42529 Q42529]
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** [http://www.uniprot.org/uniprot/P51382 P51382]
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** [http://www.uniprot.org/uniprot/P77960 P77960]
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** [http://www.uniprot.org/uniprot/Q59992 Q59992]
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** [http://www.uniprot.org/uniprot/O22765 O22765]
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** [http://www.uniprot.org/uniprot/O04225 O04225]
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** [http://www.uniprot.org/uniprot/P25269 P25269]
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** [http://www.uniprot.org/uniprot/O64991 O64991]
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** [http://www.uniprot.org/uniprot/O05625 O05625]
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** [http://www.uniprot.org/uniprot/O13831 O13831]
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** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
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** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
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** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
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** [http://www.uniprot.org/uniprot/P00931 P00931]
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** [http://www.uniprot.org/uniprot/P00929 P00929]
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** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
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** [http://www.uniprot.org/uniprot/P0A877 P0A877]
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** [http://www.uniprot.org/uniprot/P0A879 P0A879]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=tryptophan_synthase_(alpha_beta_chains)}}
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{{#set: ec number=EC-4.2.1.20}}
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{{#set: gene associated=Tiso_gene_4604|Tiso_gene_17207}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:08, 21 March 2018

Pathway PWY-7357

  • taxonomic range:
  • common name:
    • thiamine formation from pyrithiamine and oxythiamine (yeast)
  • Synonym(s):

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7357&oldid=39705"