Difference between revisions of "Tiso gene 18826"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Gene == Gene Tiso_gene_18826 == * right end position: ** 2100 * transcription direction: ** POSITIVE * left end position: ** 5 * centisome position: ** 0.18050541...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_18826 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2100
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* common name:
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* transcription direction:
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** lysine--trna_ligase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
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** 5
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* centisome position:
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** 0.18050541   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-14903]]
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** 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 L-lysine[c] '''+''' 1 a tRNAlys[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-lysyl-[tRNAlys][c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_6705]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN0-7008]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_16635]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PROUT-PWY]]
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* [[PWY-6922]]
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* [[PWY-5737]]
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* [[PWY0-1544]]
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* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=2100}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=5}}
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** [http://www.uniprot.org/uniprot/P41258 P41258]
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{{#set: centisome position=0.18050541    }}
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** [http://www.uniprot.org/uniprot/P46861 P46861]
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{{#set: reaction associated=RXN-14903|RXN0-7008}}
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** [http://www.uniprot.org/uniprot/P47382 P47382]
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{{#set: pathway associated=PROUT-PWY|PWY-6922|PWY-5737|PWY0-1544|CITRULBIO-PWY}}
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** [http://www.uniprot.org/uniprot/O57963 O57963]
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** [http://www.uniprot.org/uniprot/O51603 O51603]
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** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
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** [http://www.uniprot.org/uniprot/O83650 O83650]
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** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
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** [http://www.uniprot.org/uniprot/P43825 P43825]
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** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
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** [http://www.uniprot.org/uniprot/O84786 O84786]
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** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
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** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
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** [http://www.uniprot.org/uniprot/P56126 P56126]
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** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
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** [http://www.uniprot.org/uniprot/O67258 O67258]
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** [http://www.uniprot.org/uniprot/O84002 O84002]
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** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
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** [http://www.uniprot.org/uniprot/P32048 P32048]
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** [http://www.uniprot.org/uniprot/P37879 P37879]
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** [http://www.uniprot.org/uniprot/Q48986 Q48986]
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** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
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** [http://www.uniprot.org/uniprot/P37477 P37477]
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** [http://www.uniprot.org/uniprot/P75500 P75500]
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** [http://www.uniprot.org/uniprot/P95970 P95970]
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** [http://www.uniprot.org/uniprot/P73443 P73443]
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** [http://www.uniprot.org/uniprot/P15180 P15180]
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** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
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** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
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** [http://www.uniprot.org/uniprot/Q43776 Q43776]
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** [http://www.uniprot.org/uniprot/O74059 O74059]
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** [http://www.uniprot.org/uniprot/O30522 O30522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=lysine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.6}}
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{{#set: gene associated=Tiso_gene_6705|Tiso_gene_16635}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:09, 21 March 2018

Gene Tiso_gene_18826

  • right end position:
    • 2100
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5
  • centisome position:
    • 0.18050541
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18826&oldid=39870"