Difference between revisions of "PWY-7204"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XLLG oligosaccha...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
** xyloglucan XLLG oligosaccharide β-galactosidase
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** pyridoxal 5'-phosphate salvage II (plants)
** glycoside_hydrolase
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** polyprotein
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
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* Synonym(s):
 
* Synonym(s):
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** vitamin B6 salvage (plants)
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''8''' reactions found over '''9''' reactions in the full pathway
** 1 [[CPD-13378]][c] '''+''' 2 [[WATER]][c] '''=>''' 2 [[D-galactopyranose]][c] '''+''' 1 [[CPD-13375]][c]
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* [[3.1.3.74-RXN]]
* With common name(s):
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** 1 associated gene(s):
** 1 XLLG xyloglucan oligosaccharide[c] '''+''' 2 H2O[c] '''=>''' 2 D-galactopyranose[c] '''+''' 1 XXXG xyloglucan oligosaccharide[c]
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*** [[Tiso_gene_18054]]
 
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** 1 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
Genes have been associated with this reaction based on different elements listed below.
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* [[PMPOXI-RXN]]
* Gene: [[Tiso_gene_1398]]
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** 1 associated gene(s):
** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_1471]]
*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
* Gene: [[Tiso_gene_12839]]
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*** [[orthology-esiliculosus]]
** Source: [[annotation-in-silico_annotation]]
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* [[PNKIN-RXN]]
*** Assignment: EC-NUMBER
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** 1 associated gene(s):
* Gene: [[Tiso_gene_17558]]
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*** [[Tiso_gene_6106]]
** Source: [[annotation-in-silico_annotation]]
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** 4 reconstruction source(s) associated:
*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
== Pathways  ==
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*** [[orthology-athaliana]]
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
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*** [[orthology-creinhardtii]]
** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
== Reconstruction information  ==
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* [[PNPOXI-RXN]]
* Category: [[orthology]]
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** 1 associated gene(s):
** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_1471]]
*** Tool: [[pantograph]]
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** 2 reconstruction source(s) associated:
* Category: [[annotation]]
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*** [[annotation-in-silico_annotation]]
** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
*** Tool: [[pathwaytools]]
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* [[PYRAMKIN-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_6106]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[PYRIDOXINE-4-DEHYDROGENASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18748]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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* [[PYRIDOXKIN-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_6106]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
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* [[RXN-14181]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_18054]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14046 RXN-14046]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
{{#set: common name=xyloglucan XLLG oligosaccharide β-galactosidase}}
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{{#set: common name=pyridoxal 5'-phosphate salvage II (plants)}}
{{#set: common name=glycoside_hydrolase}}
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{{#set: common name=vitamin B6 salvage (plants)}}
{{#set: common name=polyprotein}}
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{{#set: reaction found=8}}
{{#set: ec number=EC-3.2.1.23}}
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{{#set: total reaction=9}}
{{#set: gene associated=Tiso_gene_1398|Tiso_gene_12839|Tiso_gene_17558}}
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{{#set: completion rate=89.0}}
{{#set: in pathway=PWY-6807}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:11, 21 March 2018

Pathway PWY-7204

  • taxonomic range:
  • common name:
    • pyridoxal 5'-phosphate salvage II (plants)
  • Synonym(s):
    • vitamin B6 salvage (plants)

Reaction(s) found

8 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links