Difference between revisions of "2.7.1.68-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.68-RXN 2.7.1.68-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-phosphatidylinosito...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.68-RXN 2.7.1.68-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pyridoxal 5'-phosphate salvage II (plants)
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** 1-phosphatidylinositol-4-phosphate_5-kinase
 +
** ORF
 +
** phosphatidylinositol-4-phosphate_5-kinase
 +
** phosphatidylinositol4phosphate5kinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.68 EC-2.7.1.68]
 
* Synonym(s):
 
* Synonym(s):
−
** vitamin B6 salvage (plants)
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''8''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
−
* [[3.1.3.74-RXN]]
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** 1 [[CPD-1108]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA]][c] '''+''' 1 [[PROTON]][c]
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** 1 associated gene(s):
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* With common name(s):
−
*** [[Tiso_gene_18054]]
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** 1 a 1-phosphatidyl-1D-myo-inositol 4-phosphate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate[c] '''+''' 1 H+[c]
−
** 1 reconstruction source(s) associated:
+
 
−
*** [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* [[PMPOXI-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_2021]]
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*** [[Tiso_gene_1471]]
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** Source: [[orthology-athaliana]]
−
** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_17532]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1131]]
−
* [[PNKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
−
** 1 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_6106]]
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* Gene: [[Tiso_gene_15721]]
−
** 4 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_14966]]
−
*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-esiliculosus]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
* [[PNPOXI-RXN]]
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* Gene: [[Tiso_gene_2350]]
−
** 1 associated gene(s):
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_1471]]
+
* Gene: [[Tiso_gene_11381]]
−
** 2 reconstruction source(s) associated:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
−
*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15722]]
−
* [[PYRAMKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
−
** 1 associated gene(s):
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_6106]]
+
* Gene: [[Tiso_gene_14055]]
−
** 4 reconstruction source(s) associated:
+
** Source: [[orthology-athaliana]]
−
*** [[annotation-in-silico_annotation]]
+
* Gene: [[Tiso_gene_17887]]
−
*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
−
*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_9590]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
−
* [[PYRIDOXINE-4-DEHYDROGENASE-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
** 1 associated gene(s):
+
* Gene: [[Tiso_gene_2008]]
−
*** [[Tiso_gene_18748]]
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** Source: [[orthology-athaliana]]
−
** 1 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_730]]
−
*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
−
* [[PYRIDOXKIN-RXN]]
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* Gene: [[Tiso_gene_9249]]
−
** 1 associated gene(s):
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_6106]]
+
* Gene: [[Tiso_gene_18887]]
−
** 4 reconstruction source(s) associated:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_7487]]
−
*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-esiliculosus]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-14181]]
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** Source: [[orthology-athaliana]]
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_18054]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-6352]], 3-phosphoinositide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6352 PWY-6352]
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*** [[orthology-creinhardtii]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
−
== Reaction(s) not found ==
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* [[PWY-6351]], D-myo-inositol (1,4,5)-trisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6351 PWY-6351]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14046 RXN-14046]
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** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33090}}
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* RHEA:
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{{#set: common name=pyridoxal 5'-phosphate salvage II (plants)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14425 14425]
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{{#set: common name=vitamin B6 salvage (plants)}}
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* LIGAND-RXN:
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{{#set: reaction found=8}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03469 R03469]
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{{#set: total reaction=9}}
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* UNIPROT:
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{{#set: completion rate=89.0}}
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** [http://www.uniprot.org/uniprot/P48426 P48426]
 +
** [http://www.uniprot.org/uniprot/Q56YP2 Q56YP2]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=1-phosphatidylinositol-4-phosphate_5-kinase}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=phosphatidylinositol-4-phosphate_5-kinase}}
 +
{{#set: common name=phosphatidylinositol4phosphate5kinase}}
 +
{{#set: ec number=EC-2.7.1.68}}
 +
{{#set: gene associated=Tiso_gene_2021|Tiso_gene_17532|Tiso_gene_1131|Tiso_gene_15721|Tiso_gene_14966|Tiso_gene_2350|Tiso_gene_11381|Tiso_gene_15722|Tiso_gene_14055|Tiso_gene_17887|Tiso_gene_9590|Tiso_gene_2008|Tiso_gene_730|Tiso_gene_9249|Tiso_gene_18887|Tiso_gene_7487}}
 +
{{#set: in pathway=PWY-6352|PWY-6351}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:11, 21 March 2018

Reaction 2.7.1.68-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-phosphatidylinositol-4-phosphate_5-kinase
    • ORF
    • phosphatidylinositol-4-phosphate_5-kinase
    • phosphatidylinositol4phosphate5kinase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6352, 3-phosphoinositide biosynthesis: PWY-6352
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6351, D-myo-inositol (1,4,5)-trisphosphate biosynthesis: PWY-6351
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






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