Difference between revisions of "RXN-12093"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12093 RXN-12093] == * direction: ** LEFT-TO-RIGHT * common name: ** 7-cyano-7-deazaguanine_synt...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12093 RXN-12093] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** purine nucleobases degradation II (anaerobic)
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** 7-cyano-7-deazaguanine_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.4.20 EC-6.3.4.20]
 
* Synonym(s):
 
* Synonym(s):
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** purine fermentation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''24''' reactions in the full pathway
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* With identifiers:
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* [[GLYOHMETRANS-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-13043]][c] '''+''' 1 [[AMMONIUM]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[7-CYANO-7-DEAZAGUANINE]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_16153]]
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** 1 ATP[c] '''+''' 1 7-carboxy-7-deazaguanine[c] '''+''' 1 ammonium[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 preQ0[c]
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*** [[Tiso_gene_7776]]
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*** [[Tiso_gene_18652]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_16154]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_10965]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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* [[PWY-6703]], preQ0 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6703 PWY-6703]
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* [[GUANINE-DEAMINASE-RXN]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_12280]]
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* Category: [[annotation]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-creinhardtii]]
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6004]]
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*** [[Tiso_gene_432]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-15124]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-15127]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN0-901]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11775]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.2-RXN 1.2.1.2-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.4-RXN 4.3.1.4-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-FORMIMINOTRANSFERASE-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R127-RXN R127-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R128-RXN R128-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R13-RXN R13-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R62-RXN R62-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R63-RXN R63-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8751 RXN-8751]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8752 RXN-8752]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8753 RXN-8753]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8754 RXN-8754]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1239}}
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* RHEA:
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{{#set: common name=purine nucleobases degradation II (anaerobic)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27982 27982]
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{{#set: common name=purine fermentation}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=7}}
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{{#set: common name=7-cyano-7-deazaguanine_synthase}}
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{{#set: total reaction=24}}
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{{#set: ec number=EC-6.3.4.20}}
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{{#set: completion rate=29.0}}
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{{#set: gene associated=Tiso_gene_10965}}
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{{#set: in pathway=PWY-6703}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:12, 21 March 2018

Reaction RXN-12093

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 7-cyano-7-deazaguanine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6703, preQ0 biosynthesis: PWY-6703
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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