Difference between revisions of "THREDEHYD-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_6187 == * right end position: ** 3613 * transcription direction: ** NEGATIVE * left end position: ** 846 * centisome position: ** 6.792453...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** threonine_mitochond...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_6187 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] ==
−
* right end position:
+
* direction:
−
** 3613
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** threonine_mitochondrial
−
* left end position:
+
** ORF
−
** 846
+
** serine_racemase
−
* centisome position:
+
* ec number:
−
** 6.792453   
+
** [http://enzyme.expasy.org/EC/4.3.1.19 EC-4.3.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[3.2.1.21-RXN]]
+
* With identifiers:
 +
** 1 [[THR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-OXOBUTANOATE]][c]
 +
* With common name(s):
 +
** 1 L-threonine[c] '''=>''' 1 ammonium[c] '''+''' 1 2-oxobutanoate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_12535]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
* Reaction: [[RXN-10769]]
+
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_17207]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
* Reaction: [[RXN-10773]]
+
* Gene: [[Tiso_gene_8525]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** Assignment: ec-number
+
== Pathways  ==
−
* Reaction: [[RXN-13602]]
+
* [[PWY66-428]], L-threonine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428]
−
** Source: [[annotation-in-silico_annotation]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
*** Assignment: ec-number
+
== Reconstruction information  ==
−
** Source: [[annotation-experimental_annotation]]
+
* Category: [[orthology]]
−
*** Assignment: ec-number
+
** Source: [[orthology-athaliana]]
−
* Reaction: [[RXN-13603]]
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
−
*** Assignment: ec-number
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Assignment: ec-number
+
*** Tool: [[pantograph]]
−
* Reaction: [[RXN-14179]]
+
** Source: [[orthology-esiliculosus]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** Tool: [[pantograph]]
−
*** Assignment: ec-number
+
* Category: [[manual]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[manual-primary_network]]
−
*** Assignment: ec-number
+
* Category: [[annotation]]
−
* Reaction: [[RXN-5341]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-8036]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-9674]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
+
*** Tool: [[pathwaytools]]
−
== Pathways associated ==
+
−
* [[PWY-3121]]
+
−
* [[PWY-6002]]
+
−
* [[PWY-6788]]
+
−
* [[PWY-5176]]
+
−
* [[PWY-7092]]
+
−
* [[PWY-7091]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=3613}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22108 22108]
−
{{#set: left end position=846}}
+
* LIGAND-RXN:
−
{{#set: centisome position=6.792453    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
−
{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
+
** [http://www.uniprot.org/uniprot/P25306 P25306]
 +
** [http://www.uniprot.org/uniprot/Q04513 Q04513]
 +
** [http://www.uniprot.org/uniprot/P37946 P37946]
 +
** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
 +
** [http://www.uniprot.org/uniprot/Q02145 Q02145]
 +
** [http://www.uniprot.org/uniprot/P66897 P66897]
 +
** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
 +
** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
 +
** [http://www.uniprot.org/uniprot/P25379 P25379]
 +
** [http://www.uniprot.org/uniprot/P00927 P00927]
 +
** [http://www.uniprot.org/uniprot/P20506 P20506]
 +
** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
 +
** [http://www.uniprot.org/uniprot/P04968 P04968]
 +
** [http://www.uniprot.org/uniprot/P20132 P20132]
 +
** [http://www.uniprot.org/uniprot/P09367 P09367]
 +
** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
 +
** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
 +
** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
 +
** [http://www.uniprot.org/uniprot/P31212 P31212]
 +
** [http://www.uniprot.org/uniprot/P36007 P36007]
 +
** [http://www.uniprot.org/uniprot/P73375 P73375]
 +
** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
 +
** [http://www.uniprot.org/uniprot/Q39469 Q39469]
 +
** [http://www.uniprot.org/uniprot/Q93968 Q93968]
 +
** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
 +
** [http://www.uniprot.org/uniprot/O94634 O94634]
 +
** [http://www.uniprot.org/uniprot/O59791 O59791]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=threonine_mitochondrial}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=serine_racemase}}
 +
{{#set: ec number=EC-4.3.1.19}}
 +
{{#set: gene associated=Tiso_gene_12535|Tiso_gene_17207|Tiso_gene_8525}}
 +
{{#set: in pathway=PWY66-428}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:13, 21 March 2018

Reaction THREDEHYD-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • threonine_mitochondrial
    • ORF
    • serine_racemase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-threonine[c] => 1 ammonium[c] + 1 2-oxobutanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-428, L-threonine degradation V: PWY66-428
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=THREDEHYD-RXN&oldid=40245"