Difference between revisions of "Tiso gene 7682"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate_kinase * ec n...")
(Created page with "Category:Gene == Gene Tiso_gene_7682 == * right end position: ** 10904 * transcription direction: ** POSITIVE * left end position: ** 9294 * centisome position: ** 85.1722...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
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== Gene Tiso_gene_7682 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 10904
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* common name:
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* transcription direction:
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** thymidylate_kinase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
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** 9294
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** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
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** 85.17229   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RIBOKIN-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 dTMP[c] '''=>''' 1 ADP[c] '''+''' 1 dTDP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_3755]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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== Pathways  ==
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''12''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14223]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[RIBOKIN-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=10904}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=9294}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
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{{#set: centisome position=85.17229    }}
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* UNIPROT:
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{{#set: reaction associated=RIBOKIN-RXN|RXN-14223}}
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** [http://www.uniprot.org/uniprot/Q57741 Q57741]
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{{#set: pathway associated=RIBOKIN-PWY}}
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** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
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** [http://www.uniprot.org/uniprot/P0A720 P0A720]
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** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
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** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
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** [http://www.uniprot.org/uniprot/P33803 P33803]
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** [http://www.uniprot.org/uniprot/P42490 P42490]
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** [http://www.uniprot.org/uniprot/P00572 P00572]
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** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
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** [http://www.uniprot.org/uniprot/P68693 P68693]
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** [http://www.uniprot.org/uniprot/P23919 P23919]
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** [http://www.uniprot.org/uniprot/P36590 P36590]
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** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
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** [http://www.uniprot.org/uniprot/O81650 O81650]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=thymidylate_kinase}}
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{{#set: ec number=EC-2.7.4.12}}
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{{#set: ec number=EC-2.7.4.13}}
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{{#set: ec number=EC-2.7.4.9}}
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{{#set: gene associated=Tiso_gene_3755}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:13, 21 March 2018

Gene Tiso_gene_7682

  • right end position:
    • 10904
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9294
  • centisome position:
    • 85.17229
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7682&oldid=40257"