Difference between revisions of "Tiso gene 18518"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase_d...")
(Created page with "Category:Gene == Gene Tiso_gene_18518 == * right end position: ** 1401 * transcription direction: ** POSITIVE * left end position: ** 34 * centisome position: ** 1.1451668...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] ==
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== Gene Tiso_gene_18518 ==
* direction:
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* right end position:
** LEFT-TO-RIGHT
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** 1401
* common name:
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* transcription direction:
** ORF
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** POSITIVE
** adenylate_kinase_domain-containing_protein_1
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* left end position:
** nucleoside_diphosphate_kinase
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** 34
* ec number:
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* centisome position:
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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** 1.1451668   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reactions associated ==
* With identifiers:
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* Reaction: [[3-DEHYDROSPHINGANINE-REDUCTASE-RXN]]
** 1 [[CDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CTP]][c] '''+''' 1 [[ADP]][c]
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* With common name(s):
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** 1 CDP[c] '''+''' 1 ATP[c] '''=>''' 1 CTP[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_17272]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9290]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18224]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17271]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_195]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16529]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7205]], CMP phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7205 PWY-7205]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways associated ==
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* [[PWY-5129]]
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* [[PWY3DJ-12]]
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* [[SPHINGOLIPID-SYN-PWY]]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: right end position=1401}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25237 25237]
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{{#set: transcription direction=POSITIVE}}
* LIGAND-RXN:
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{{#set: left end position=34}}
** [http://www.genome.jp/dbget-bin/www_bget?R00570 R00570]
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{{#set: centisome position=1.1451668    }}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3-DEHYDROSPHINGANINE-REDUCTASE-RXN}}
{{#set: common name=ORF}}
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{{#set: pathway associated=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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{{#set: common name=nucleoside_diphosphate_kinase}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Tiso_gene_17272|Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_17271|Tiso_gene_195|Tiso_gene_16529}}
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{{#set: in pathway=PWY-7205}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:14, 21 March 2018

Gene Tiso_gene_18518

  • right end position:
    • 1401
  • transcription direction:
    • POSITIVE
  • left end position:
    • 34
  • centisome position:
    • 1.1451668
  • Synonym(s):

Reactions associated

Pathways associated

External links