Difference between revisions of "CYANCAT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://enzyme.expasy.org/EC/2.4.1.223 EC-2.4.1.223]
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* common name:
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** cyanate degradation
 
* Synonym(s):
 
* Synonym(s):
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** cyanate catabolism
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''3''' reactions in the full pathway
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** 1 [[GlcA-Gal-Gal-Xyl-Proteins]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c]
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* [[R524-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a [protein]-3-O-(β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine[c] '''=>''' 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_15128]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_4321]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN0-5222]]
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* Gene: [[Tiso_gene_10445]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_8143]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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* [[RXN0-5224]]
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* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
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** 10 associated gene(s):
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** '''3''' reactions found over '''13''' reactions in the full pathway
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*** [[Tiso_gene_18927]]
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== Reconstruction information  ==
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*** [[Tiso_gene_6150]]
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* Category: [[orthology]]
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*** [[Tiso_gene_1600]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_3056]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_7660]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R07397 R07397]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
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{{#set: direction=LEFT-TO-RIGHT}}
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* PLANTCYC : CYANCAT-PWY
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{{#set: ec number=EC-2.4.1.223}}
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* ARACYC:
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{{#set: gene associated=Tiso_gene_4321|Tiso_gene_10445|Tiso_gene_8143}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
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{{#set: in pathway=PWY-6558}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: reconstruction category=orthology}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: common name=cyanate degradation}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=cyanate catabolism}}
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{{#set: reaction found=3}}
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{{#set: total reaction=3}}
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{{#set: completion rate=100.0}}

Latest revision as of 19:14, 21 March 2018

Pathway CYANCAT-PWY

  • taxonomic range:
  • common name:
    • cyanate degradation
  • Synonym(s):
    • cyanate catabolism

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CYANCAT-PWY&oldid=40347"