Difference between revisions of "PWY-5041"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATESYN-RXN GLUTAMATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin-de...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATESYN-RXN GLUTAMATESYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
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** S-adenosyl-L-methionine cycle II
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** glutamate_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.4.1.13 EC-1.4.1.13]
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* Synonym(s):
 
* Synonym(s):
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** activated methyl cycle
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** SAM cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''4''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[NADP]][c] '''+''' 2 [[GLT]][c]
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* [[ADENOSYLHOMOCYSTEINASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 L-glutamine[c] '''=>''' 1 NADP+[c] '''+''' 2 L-glutamate[c]
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*** [[Tiso_gene_14191]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_11511]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_2581]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
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* [[HOMOCYSMET-RXN]]
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** Source: [[annotation-experimental_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_1602]]
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** Source: [[orthology-athaliana]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_1154]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-7605]]
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*** Assignment: EC-NUMBER
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** 0 associated gene:
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** Source: [[annotation-experimental_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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* [[S-ADENMETSYN-RXN]]
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* [[GLUTAMINEFUM-PWY]], L-glutamine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINEFUM-PWY GLUTAMINEFUM-PWY]
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** 1 associated gene(s):
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Tiso_gene_13443]]
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* [[GLUTSYN-PWY]], L-glutamate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTSYN-PWY GLUTSYN-PWY]
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** 6 reconstruction source(s) associated:
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* Category: [[orthology]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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*** [[manual-primary_network]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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== Reaction(s) not found ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15501 15501]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5041 PWY-5041]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00114 R00114]
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{{#set: taxonomic range=TAX-2759}}
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* UNIPROT:
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{{#set: common name=S-adenosyl-L-methionine cycle II}}
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** [http://www.uniprot.org/uniprot/Q05756 Q05756]
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{{#set: common name=activated methyl cycle|SAM cycle}}
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** [http://www.uniprot.org/uniprot/Q05755 Q05755]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/Q9PJA4 Q9PJA4]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/Q9PJA2 Q9PJA2]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q9CG25 Q9CG25]
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** [http://www.uniprot.org/uniprot/Q58746 Q58746]
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** [http://www.uniprot.org/uniprot/P09831 P09831]
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** [http://www.uniprot.org/uniprot/Q9CG24 Q9CG24]
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** [http://www.uniprot.org/uniprot/P09832 P09832]
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** [http://www.uniprot.org/uniprot/P39812 P39812]
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** [http://www.uniprot.org/uniprot/Q9S2Y9 Q9S2Y9]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
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{{#set: common name=glutamate_synthase}}
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{{#set: ec number=EC-1.4.1.13}}
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{{#set: gene associated=Tiso_gene_11511|Tiso_gene_2581|Tiso_gene_1154}}
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{{#set: in pathway=GLUTAMINEFUM-PWY|GLUTSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:14, 21 March 2018

Pathway PWY-5041

  • taxonomic range:
  • common name:
    • S-adenosyl-L-methionine cycle II
  • Synonym(s):
    • activated methyl cycle
    • SAM cycle

Reaction(s) found

4 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5041&oldid=40380"