Difference between revisions of "3.1.26.4-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=P-PANTOCYSDECARB-RXN P-PANTOCYSDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http:/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.4-RXN 3.1.26.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonuclease ** ORF *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=P-PANTOCYSDECARB-RXN P-PANTOCYSDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.4-RXN 3.1.26.4-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ribonuclease
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.36 EC-4.1.1.36]
+
** [http://enzyme.expasy.org/EC/3.1.26.4 EC-3.1.26.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PANTETHEINE-P]][c]
+
** n [[WATER]][c] '''+''' 1 [[RNA-DNA-hybrids]][c] '''=>''' n [[Nucleoside-Monophosphates]][c] '''+''' 1 [[DNA-Holder]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 R-4'-phosphopantothenoyl-L-cysteine[c] '''=>''' 1 CO2[c] '''+''' 1 4'-phosphopantetheine[c]
+
** n H2O[c] '''+''' 1 a RNA-DNA hybrid[c] '''=>''' n a nucleoside 5'-monophosphate[c] '''+''' 1 DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_15171]]
+
* Gene: [[Tiso_gene_16584]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-synechocystis]]
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9459]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9453]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3410]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10743]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[COA-PWY-1]], coenzyme A biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[COA-PWY]], coenzyme A biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY COA-PWY]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16793 16793]
+
** [http://www.uniprot.org/uniprot/P52975 P52975]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q9CDG3 Q9CDG3]
−
** [http://www.genome.jp/dbget-bin/www_bget?R03269 R03269]
+
** [http://www.uniprot.org/uniprot/Q9PM39 Q9PM39]
 +
** [http://www.uniprot.org/uniprot/Q9JX40 Q9JX40]
 +
** [http://www.uniprot.org/uniprot/P43807 P43807]
 +
** [http://www.uniprot.org/uniprot/P43808 P43808]
 +
** [http://www.uniprot.org/uniprot/Q9PJA1 Q9PJA1]
 +
** [http://www.uniprot.org/uniprot/Q9CG17 Q9CG17]
 +
** [http://www.uniprot.org/uniprot/Q9JTD9 Q9JTD9]
 +
** [http://www.uniprot.org/uniprot/Q57599 Q57599]
 +
** [http://www.uniprot.org/uniprot/O44114 O44114]
 +
** [http://www.uniprot.org/uniprot/P0A7Y4 P0A7Y4]
 +
** [http://www.uniprot.org/uniprot/P10442 P10442]
 +
** [http://www.uniprot.org/uniprot/P13319 P13319]
 +
** [http://www.uniprot.org/uniprot/Q7LYY8 Q7LYY8]
 +
** [http://www.uniprot.org/uniprot/P0A2B9 P0A2B9]
 +
** [http://www.uniprot.org/uniprot/Q04740 Q04740]
 +
** [http://www.uniprot.org/uniprot/Q49050 Q49050]
 +
** [http://www.uniprot.org/uniprot/O69014 O69014]
 +
** [http://www.uniprot.org/uniprot/Q54222 Q54222]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.1.36}}
+
{{#set: common name=ribonuclease}}
−
{{#set: gene associated=Tiso_gene_15171}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=COA-PWY-1|COA-PWY}}
+
{{#set: ec number=EC-3.1.26.4}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_16584|Tiso_gene_9459|Tiso_gene_9453|Tiso_gene_3410|Tiso_gene_10743}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction 3.1.26.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonuclease
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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