Difference between revisions of "PWY-1861"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12959 RXN-12959] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12959 RXN-12959] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.7.1.174 EC-2.7.1.174]
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** formaldehyde assimilation II (RuMP Cycle)
 
* Synonym(s):
 
* Synonym(s):
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** ribulose monophosphate cycle
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** formaldehyde assimilation
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** RuMP pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CTP]][c] '''+''' 1 [[DIACYLGLYCEROL]][c] '''=>''' 1 [[CDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[L-PHOSPHATIDATE]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 CTP[c] '''+''' 1 a 1,2-diacyl-sn-glycerol[c] '''=>''' 1 CDP[c] '''+''' 1 H+[c] '''+''' 1 a 1,2-diacyl-sn-glycerol 3-phosphate[c]
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*** [[Tiso_gene_11559]]
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*** [[Tiso_gene_5008]]
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== Genes associated with this reaction  ==
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** 5 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[TRIGLSYN-PWY]], diacylglycerol and triacylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRIGLSYN-PWY TRIGLSYN-PWY]
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*** [[orthology-athaliana]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* Category: [[annotation]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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* [[2TRANSKETO-RXN]]
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*** Tool: [[pathwaytools]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11559]]
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*** [[Tiso_gene_5008]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[6PFRUCTPHOS-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_5733]]
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*** [[Tiso_gene_596]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18217]]
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** 5 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_19140]]
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*** [[Tiso_gene_4754]]
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*** [[Tiso_gene_10879]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_17601]]
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*** [[Tiso_gene_1831]]
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** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25951 25951]
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{{#set: common name=formaldehyde assimilation II (RuMP Cycle)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|RuMP pathway}}
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{{#set: ec number=EC-2.7.1.174}}
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{{#set: reaction found=7}}
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{{#set: in pathway=TRIGLSYN-PWY}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=78.0}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:16, 21 March 2018

Pathway PWY-1861

  • taxonomic range:
  • common name:
    • formaldehyde assimilation II (RuMP Cycle)
  • Synonym(s):
    • ribulose monophosphate cycle
    • formaldehyde assimilation
    • RuMP pathway

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-1861&oldid=40596"