Difference between revisions of "RXN-9724"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TA...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9724 RXN-9724] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9724 RXN-9724] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://enzyme.expasy.org/EC/1.3.1.77 EC-1.3.1.77]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
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** Calvin-Benson-Bassham cycle
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* Synonym(s):
 
* Synonym(s):
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** photosynthetic dark reactions
 
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** photosynthetic CO2 fixation
 
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** reductive pentose phosphate pathway
 
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** Calvin cycle
 
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** carbon fixation
 
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** Calvin-Benson cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''13''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[1.2.1.13-RXN]]
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** 3 [[PROTON]][c] '''+''' 1 [[PELARGONIDIN-CMPD]][c] '''+''' 2 [[NADPH]][c] '''=>''' 2 [[NADP]][c] '''+''' 1 [[CPD-10413]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_6766]]
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** 3 H+[c] '''+''' 1 pelargonidin[c] '''+''' 2 NADPH[c] '''=>''' 2 NADP+[c] '''+''' 1 (-)-epiafzelechin[c]
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*** [[Tiso_gene_6765]]
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*** [[Tiso_gene_20000]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_10646]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_15272]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_9504]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[1TRANSKETO-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-6035]], 2,3-cis-flavanols biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6035 PWY-6035]
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*** [[Tiso_gene_11559]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_5008]]
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== Reconstruction information  ==
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** 5 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[2TRANSKETO-RXN]]
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** 2 associated gene(s):
+
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*** [[Tiso_gene_11559]]
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*** [[Tiso_gene_5008]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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−
*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Tiso_gene_15398]]
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*** [[Tiso_gene_9435]]
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−
*** [[Tiso_gene_16502]]
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*** [[Tiso_gene_4905]]
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*** [[Tiso_gene_8226]]
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*** [[Tiso_gene_4904]]
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*** [[Tiso_gene_3483]]
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** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PHOSGLYPHOS-RXN]]
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−
** 6 associated gene(s):
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−
*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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−
* [[PHOSPHORIBULOKINASE-RXN]]
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−
** 1 associated gene(s):
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−
*** [[Tiso_gene_17637]]
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−
** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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−
* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18217]]
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−
** 5 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_12199]]
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** 2 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[RIBULP3EPIM-RXN]]
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−
** 3 associated gene(s):
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−
*** [[Tiso_gene_19140]]
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*** [[Tiso_gene_4754]]
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*** [[Tiso_gene_10879]]
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** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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−
*** [[orthology-creinhardtii]]
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* [[SEDOBISALDOL-RXN]]
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−
** 4 associated gene(s):
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−
*** [[Tiso_gene_14568]]
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−
*** [[Tiso_gene_9179]]
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−
*** [[Tiso_gene_65]]
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−
*** [[Tiso_gene_12272]]
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−
** 4 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
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−
*** [[orthology-creinhardtii]]
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−
*** [[orthology-synechocystis]]
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−
*** [[manual-primary_network]]
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−
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
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−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_8226]]
+
−
*** [[Tiso_gene_4905]]
+
−
*** [[Tiso_gene_16502]]
+
−
*** [[Tiso_gene_9435]]
+
−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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−
*** [[manual-primary_network]]
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−
*** [[orthology-creinhardtii]]
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−
* [[TRIOSEPISOMERIZATION-RXN]]
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−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_19961]]
+
−
*** [[Tiso_gene_20000]]
+
−
*** [[Tiso_gene_19962]]
+
−
*** [[Tiso_gene_10646]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
* PLANTCYC : CALVIN-PWY
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* LIGAND-RXN:
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* ARACYC:
+
** [http://www.genome.jp/dbget-bin/www_bget?R06541 R06541]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: ec number=EC-1.3.1.77}}
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{{#set: taxonomic range=TAX-39119}}
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{{#set: gene associated=Tiso_gene_15272|Tiso_gene_9504}}
−
{{#set: taxonomic range=TAX-38254}}
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{{#set: in pathway=PWY-6035}}
−
{{#set: taxonomic range=TAX-29197}}
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{{#set: reconstruction category=orthology}}
−
{{#set: taxonomic range=TAX-38410}}
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
{{#set: taxonomic range=TAX-5747}}
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{{#set: reconstruction tool=pantograph}}
−
{{#set: taxonomic range=TAX-2864}}
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−
{{#set: taxonomic range=TAX-877183}}
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−
{{#set: taxonomic range=TAX-2836}}
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−
{{#set: taxonomic range=TAX-3027}}
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−
{{#set: taxonomic range=TAX-2830}}
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−
{{#set: taxonomic range=TAX-2833}}
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−
{{#set: taxonomic range=TAX-3041}}
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−
{{#set: taxonomic range=TAX-33682}}
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−
{{#set: taxonomic range=TAX-2763}}
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−
{{#set: taxonomic range=TAX-2870}}
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−
{{#set: taxonomic range=TAX-2825}}
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−
{{#set: taxonomic range=TAX-2}}
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−
{{#set: taxonomic range=TAX-33090}}
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−
{{#set: common name=Calvin-Benson-Bassham cycle}}
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−
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
+
−
{{#set: reaction found=13}}
+
−
{{#set: total reaction=13}}
+
−
{{#set: completion rate=100.0}}
+

Latest revision as of 19:17, 21 March 2018

Reaction RXN-9724

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6035, 2,3-cis-flavanols biosynthesis: PWY-6035
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9724&oldid=40647"