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| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5665 PWY-5665] == |
| − | * direction: | + | * taxonomic range: |
| − | ** LEFT-TO-RIGHT | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-73496 TAX-73496] |
| | * common name: | | * common name: |
| − | ** beta-glucosidase-like_chloroplastic | + | ** vanillin biosynthesis I |
| − | ** ORF
| + | |
| − | ** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
| + | |
| − | ** beta_glucosidase
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''1''' reactions found over '''3''' reactions in the full pathway |
| − | ** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c]
| + | * [[RXN-8872]] |
| − | * With common name(s):
| + | ** 1 associated gene(s): |
| − | ** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 2-hydroxy-2-methylpropanenitrile[c]
| + | *** [[Tiso_gene_1035]] |
| − | | + | ** 1 reconstruction source(s) associated: |
| − | == Genes associated with this reaction ==
| + | *** [[orthology-esiliculosus]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | == Reaction(s) not found == |
| − | * Gene: [[Tiso_gene_3467]]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8871 RXN-8871] |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8873 RXN-8873] |
| − | *** Assignment: EC-NUMBER | + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER | + | |
| − | * Gene: [[Tiso_gene_5836]] | + | |
| − | ** Source: [[annotation-in-silico_annotation]] | + | |
| − | *** Assignment: EC-NUMBER | + | |
| − | ** Source: [[annotation-experimental_annotation]] | + | |
| − | *** Assignment: EC-NUMBER | + | |
| − | * Gene: [[Tiso_gene_13305]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_6187]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_10001]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_13306]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_8669]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_15066]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_2344]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_6188]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_6007]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_2843]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_15067]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_6497]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | == Pathways == | + | |
| − | * [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121] | + | |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway | + | |
| − | * [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
| + | |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | {{#set: taxonomic range=TAX-73496}} |
| − | {{#set: common name=beta-glucosidase-like_chloroplastic}} | + | {{#set: common name=vanillin biosynthesis I}} |
| − | {{#set: common name=ORF}} | + | {{#set: reaction found=1}} |
| − | {{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}} | + | {{#set: total reaction=3}} |
| − | {{#set: common name=beta_glucosidase}} | + | {{#set: completion rate=33.0}} |
| − | {{#set: ec number=EC-3.2.1.21}}
| + | |
| − | {{#set: gene associated=Tiso_gene_3467|Tiso_gene_5836|Tiso_gene_13305|Tiso_gene_6187|Tiso_gene_10001|Tiso_gene_13306|Tiso_gene_8669|Tiso_gene_15066|Tiso_gene_2344|Tiso_gene_6188|Tiso_gene_6007|Tiso_gene_2843|Tiso_gene_15067|Tiso_gene_6497}}
| + | |
| − | {{#set: in pathway=PWY-3121|PWY-7091}}
| + | |
| − | {{#set: reconstruction category=orthology|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
