Difference between revisions of "PWY-6558"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7659 RXN-7659] == * direction: ** REVERSIBLE * common name: ** geranylgeranyl_diphosphate_reduc...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7659 RXN-7659] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
−
** geranylgeranyl_diphosphate_reductase
+
** heparan sulfate biosynthesis (late stages)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''13''' reactions in the full pathway
−
** 1 [[CPD-7003]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CPD-7002]][c]
+
* [[2.4.1.223-RXN]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 1 tetrahydrogeranylgeranyl diphosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 dihydrogeranylgeranyl diphosphate[c]
+
*** [[Tiso_gene_4321]]
−
 
+
*** [[Tiso_gene_10445]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_8143]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 1 reconstruction source(s) associated:
−
* Gene: [[Tiso_gene_2613]]
+
*** [[orthology-esiliculosus]]
−
** Source: [[annotation-in-silico_annotation]]
+
* [[2.4.1.224-RXN]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
** 2 associated gene(s):
−
** Source: [[annotation-experimental_annotation]]
+
*** [[Tiso_gene_6495]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_6496]]
−
== Pathways  ==
+
** 1 reconstruction source(s) associated:
−
* [[PWY-5063]], phytyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5063 PWY-5063]
+
*** [[annotation-in-silico_annotation]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[2.4.1.225-RXN]]
−
== Reconstruction information  ==
+
** 1 associated gene(s):
−
* Category: [[annotation]]
+
*** [[Tiso_gene_6495]]
−
** Source: [[annotation-in-silico_annotation]]
+
** 1 reconstruction source(s) associated:
−
*** Tool: [[pathwaytools]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[annotation-experimental_annotation]]
+
== Reaction(s) not found ==
−
*** Tool: [[pathwaytools]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.23-RXN 2.8.2.23-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.29-RXN 2.8.2.29-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=5.1.3.17-RXN 5.1.3.17-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=HEPARITIN-SULFOTRANSFERASE-RXN HEPARITIN-SULFOTRANSFERASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11557 RXN-11557]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11558 RXN-11558]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11562 RXN-11562]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11563 RXN-11563]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16327 RXN-16327]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-33208}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R08755 R08755]
+
{{#set: common name=heparan sulfate biosynthesis (late stages)}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reaction found=3}}
−
{{#set: common name=geranylgeranyl_diphosphate_reductase}}
+
{{#set: total reaction=13}}
−
{{#set: gene associated=Tiso_gene_2613}}
+
{{#set: completion rate=23.0}}
−
{{#set: in pathway=PWY-5063}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:21, 21 March 2018

Pathway PWY-6558

  • taxonomic range:
  • common name:
    • heparan sulfate biosynthesis (late stages)
  • Synonym(s):

Reaction(s) found

3 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6558&oldid=41033"