Difference between revisions of "Tiso gene 1389"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROG-RXN ALCOHOL-DEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** polyketi...")
(Created page with "Category:Gene == Gene Tiso_gene_1389 == * right end position: ** 11614 * transcription direction: ** POSITIVE * left end position: ** 9816 * centisome position: ** 40.9597...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROG-RXN ALCOHOL-DEHYDROG-RXN] ==
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== Gene Tiso_gene_1389 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 11614
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** ORF
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* left end position:
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* ec number:
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** 9816
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** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
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* centisome position:
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** 40.959732   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RIBOFLAVINSYNDEAM-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[ETOH]][c] '''<=>''' 1 [[ACETALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NAD+[c] '''+''' 1 ethanol[c] '''<=>''' 1 acetaldehyde[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
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** Source: [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18459]]
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** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_7649]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RIBOFLAVINSYNREDUC-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_6563]]
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** Source: [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5424]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5425]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6562]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ETOH-ACETYLCOA-ANA-PWY ETOH-ACETYLCOA-ANA-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6333]], acetaldehyde biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6333 PWY-6333]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-5486]], pyruvate fermentation to ethanol II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5486 PWY-5486]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[P161-PWY]], acetylene degradation: [http://metacyc.org/META/NEW-IMAGE?object=P161-PWY P161-PWY]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5480]], pyruvate fermentation to ethanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5480 PWY-5480]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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* Category: [[annotation]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[RIBOSYN2-PWY]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=11614}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25290 25290]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=9816}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00754 R00754]
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{{#set: centisome position=40.959732    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=RIBOFLAVINSYNDEAM-RXN|RIBOFLAVINSYNREDUC-RXN}}
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{{#set: common name=polyketide_synthase}}
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{{#set: pathway associated=RIBOSYN2-PWY}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.1.1.1}}
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{{#set: gene associated=Tiso_gene_18459|Tiso_gene_7649|Tiso_gene_6563|Tiso_gene_5424|Tiso_gene_5425|Tiso_gene_6562}}
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{{#set: in pathway=PWY66-21|ETOH-ACETYLCOA-ANA-PWY|PWY-7118|FERMENTATION-PWY|PWY-6333|PWY-5486|P161-PWY|P122-PWY|PWY4LZ-257|PWY-5480|PWY-6587}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:21, 21 March 2018

Gene Tiso_gene_1389

  • right end position:
    • 11614
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9816
  • centisome position:
    • 40.959732
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1389&oldid=41120"