Difference between revisions of "RXN-15829"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_mitochondrial-proc...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** sucrose biosynthesis II
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** probable_mitochondrial-processingpeptidasesubunitbeta
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** cytochrome_b6-fcomplexiron-sulfurchloroplastic
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** ubiquinol-cytochrome_c_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
 
* Synonym(s):
 
* Synonym(s):
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** sucrose biosynthesis II (from starch degradation intermediates)
 
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** sucrose biosynthesis II (plant cytosol)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
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* [[GLUC1PURIDYLTRANS-RXN]]
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** 1 [[Ubiquinones]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 4 [[PROTON]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e] '''+''' 2 [[Oxidized-CycA1-cytochromes]][e]
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** 14 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_6459]]
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** 1 a ubiquinone[c] '''+''' 2 a reduced CycA1 cytochrome[e] '''+''' 4 H+[c] '''=>''' 1 an ubiquinol[c] '''+''' 2 H+[e] '''+''' 2 an oxidized CycA1 cytochrome[e]
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*** [[Tiso_gene_4816]]
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*** [[Tiso_gene_17531]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5879]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_17566]]
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* Gene: [[Tiso_gene_7235]]
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*** [[Tiso_gene_16930]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_14796]]
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* Gene: [[Tiso_gene_9627]]
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*** [[Tiso_gene_9110]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_13477]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_7440]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_11401]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_6457]]
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* Gene: [[Tiso_gene_4973]]
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*** [[Tiso_gene_6458]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_7102]]
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* Gene: [[Tiso_gene_18330]]
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** 4 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_15926]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[GLUCOKIN-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
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*** [[Tiso_gene_3107]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_1303]]
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== Reconstruction information  ==
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** 4 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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* Category: [[annotation]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* [[PGLUCISOM-RXN]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_19480]]
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*** Tool: [[pathwaytools]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-esiliculosus]]
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* [[PHOSPHOGLUCMUT-RXN]]
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** 2 associated gene(s):
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−
*** [[Tiso_gene_4816]]
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−
*** [[Tiso_gene_13477]]
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−
** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14353]]
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** 1 associated gene(s):
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*** [[Tiso_gene_1011]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[SUCROSE-PHOSPHATE-SYNTHASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14247]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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−
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14354 RXN-14354]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCROSE-PHOSPHATASE-RXN SUCROSE-PHOSPHATASE-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=sucrose biosynthesis II}}
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{{#set: common name=probable_mitochondrial-processingpeptidasesubunitbeta}}
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{{#set: common name=sucrose biosynthesis II (from starch degradation intermediates)|sucrose biosynthesis II (plant cytosol)}}
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{{#set: common name=cytochrome_b6-fcomplexiron-sulfurchloroplastic}}
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{{#set: reaction found=6}}
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{{#set: common name=ubiquinol-cytochrome_c_reductase}}
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{{#set: total reaction=8}}
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{{#set: ec number=EC-1.10.2.2}}
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{{#set: completion rate=75.0}}
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{{#set: gene associated=Tiso_gene_7235|Tiso_gene_9627|Tiso_gene_4973|Tiso_gene_18330|Tiso_gene_15926}}
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{{#set: in pathway=PWY-6692}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:21, 21 March 2018

Reaction RXN-15829

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • probable_mitochondrial-processingpeptidasesubunitbeta
    • cytochrome_b6-fcomplexiron-sulfurchloroplastic
    • ubiquinol-cytochrome_c_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6692, Fe(II) oxidation: PWY-6692
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15829&oldid=41135"