Difference between revisions of "RXN-13202"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** spermidine biosynthesis III
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** carbamoyl_phosphate_synthetase
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** protein_pyr1-3
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[SAMDECARB-RXN]]
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** 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[Pi]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_4269]]
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** 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''+''' 2 ATP[c] '''=>''' 2 H+[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 2 ADP[c] '''+''' 1 phosphate[c]
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*** [[Tiso_gene_11030]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_4976]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=ARGDECARBOX-RXN ARGDECARBOX-RXN]
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* Gene: [[Tiso_gene_4685]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12514 RXN-12514]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12515 RXN-12515]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4975]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
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{{#set: common name=spermidine biosynthesis III}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
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{{#set: reaction found=1}}
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* LIGAND-RXN:
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{{#set: total reaction=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
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{{#set: completion rate=25.0}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/O15829 O15829]
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** [http://www.uniprot.org/uniprot/O15830 O15830]
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** [http://www.uniprot.org/uniprot/P07756 P07756]
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** [http://www.uniprot.org/uniprot/P31327 P31327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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{{#set: common name=protein_pyr1-3}}
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{{#set: ec number=EC-6.3.4.16}}
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{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4685|Tiso_gene_4975}}
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{{#set: in pathway=PWY-4984}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:22, 21 March 2018

Reaction RXN-13202

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl_phosphate_synthetase
    • protein_pyr1-3
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hydrogencarbonate[c] + 1 ammonium[c] + 2 ATP[c] => 2 H+[c] + 1 carbamoyl phosphate[c] + 2 ADP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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