Difference between revisions of "RXN0-4083"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-4083 RXN0-4083] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
Line 1: Line 1:
[[Category:Pathway]]
+
[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-4083 RXN0-4083] ==
* taxonomic range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
+
** LEFT-TO-RIGHT
* common name:
+
** all-trans-farnesol biosynthesis
+
 
* Synonym(s):
 
* Synonym(s):
** trans,trans-farnesol biosynthesis
 
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''3''' reactions found over '''4''' reactions in the full pathway
+
* With identifiers:
* [[FPPSYN-RXN]]
+
** 1 [[NA+]][e] '''+''' 1 [[SER]][e] '''=>''' 1 [[NA+]][c] '''+''' 1 [[SER]][c]
** 1 associated gene(s):
+
* With common name(s):
*** [[Tiso_gene_16284]]
+
** 1 Na+[e] '''+''' 1 L-serine[e] '''=>''' 1 Na+[c] '''+''' 1 L-serine[c]
** 4 reconstruction source(s) associated:
+
 
*** [[orthology-athaliana]]
+
== Genes associated with this reaction  ==
*** [[orthology-synechocystis]]
+
Genes have been associated with this reaction based on different elements listed below.
*** [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_1764]]
*** [[manual-primary_network]]
+
** Source: [[orthology-creinhardtii]]
* [[GPPSYN-RXN]]
+
** Source: [[orthology-creinhardtii]]
** 9 associated gene(s):
+
== Pathways  ==
*** [[Tiso_gene_19542]]
+
== Reconstruction information  ==
*** [[Tiso_gene_18201]]
+
* Category: [[orthology]]
*** [[Tiso_gene_16284]]
+
** Source: [[orthology-creinhardtii]]
*** [[Tiso_gene_2848]]
+
*** Tool: [[pantograph]]
*** [[Tiso_gene_1035]]
+
*** [[Tiso_gene_4719]]
+
*** [[Tiso_gene_11582]]
+
*** [[Tiso_gene_13582]]
+
*** [[Tiso_gene_10317]]
+
** 5 reconstruction source(s) associated:
+
*** [[orthology-athaliana]]
+
*** [[orthology-creinhardtii]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
*** [[manual-primary_network]]
+
* [[IPPISOM-RXN]]
+
** 1 associated gene(s):
+
*** [[Tiso_gene_8653]]
+
** 2 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
== Reaction(s) not found ==
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8617 RXN-8617]
+
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2759}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=all-trans-farnesol biosynthesis}}
+
{{#set: gene associated=Tiso_gene_1764}}
{{#set: common name=trans,trans-farnesol biosynthesis}}
+
{{#set: in pathway=}}
{{#set: reaction found=3}}
+
{{#set: reconstruction category=orthology}}
{{#set: total reaction=4}}
+
{{#set: reconstruction source=orthology-creinhardtii}}
{{#set: completion rate=75.0}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:23, 21 March 2018

Reaction RXN0-4083

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 Na+[e] + 1 L-serine[e] => 1 Na+[c] + 1 L-serine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links