Difference between revisions of "PWY-7184"

Latest revision as of 19:26, 21 March 2018

Pathway PWY-7184

taxonomic range:
- TAX-2157
- TAX-2759
- TAX-2
common name:
- pyrimidine deoxyribonucleotides de novo biosynthesis I
Synonym(s):

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

CDPREDUCT-RXN
- 4 associated gene(s):
- 6 reconstruction source(s) associated:
DCDPKIN-RXN
- 6 associated gene(s):
- 6 reconstruction source(s) associated:
DTDPKIN-RXN
- 6 associated gene(s):
- 6 reconstruction source(s) associated:
DTMPKI-RXN
- 1 associated gene(s):
  - Tiso_gene_3755
- 3 reconstruction source(s) associated:
DUDPKIN-RXN
- 6 associated gene(s):
- 6 reconstruction source(s) associated:
DUTP-PYROP-RXN
- 2 associated gene(s):
  - Tiso_gene_18793
  - Tiso_gene_18792
- 3 reconstruction source(s) associated:
RXN-12195
- 101 associated gene(s):
- 3 reconstruction source(s) associated:
THYMIDYLATESYN-RXN
- 2 associated gene(s):
  - Tiso_gene_7708
  - Tiso_gene_18478
- 2 reconstruction source(s) associated:
  - manual-primary_network
  - annotation-in-silico_annotation
UDPREDUCT-RXN
- 4 associated gene(s):
- 6 reconstruction source(s) associated:

Reaction(s) not found

External links

ECOCYC:
- PWY-7184

Difference between revisions of "PWY-7184"

Latest revision as of 19:26, 21 March 2018

Contents

Pathway PWY-7184

Reaction(s) found

Reaction(s) not found

External links

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@@ Line 1: / Line 1: @@
-[[Category:Gene]]
+[[Category:Pathway]]
-== Gene Tiso_gene_3855 ==
+== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] ==
-* right end position:
+* taxonomic range:
-** 4501
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
-* transcription direction:
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
-** POSITIVE
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
-* left end position:
+* common name:
-** 1467
+** pyrimidine deoxyribonucleotides de novo biosynthesis I
-* centisome position:
-** 9.21193
 * Synonym(s):
-== Reactions associated ==
+== Reaction(s) found ==
-* Reaction: [[KETOACYLCOATHIOL-RXN]]
+ '''9''' reactions found over '''9''' reactions in the full pathway
-** Source: [[annotation-in-silico_annotation]]
+* [[CDPREDUCT-RXN]]
-*** Assignment: ec-number
+** 4 associated gene(s):
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_10617]]
-*** Assignment: ec-number
+*** [[Tiso_gene_9916]]
-* Reaction: [[RXN-10699]]
+*** [[Tiso_gene_9915]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_10138]]
-*** Assignment: ec-number
+** 6 reconstruction source(s) associated:
-** Source: [[annotation-experimental_annotation]]
+*** [[annotation-experimental_annotation]]
-*** Assignment: ec-number
+*** [[orthology-esiliculosus]]
-* Reaction: [[RXN-10700]]
+*** [[annotation-in-silico_annotation]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[orthology-athaliana]]
-*** Assignment: ec-number
+*** [[orthology-synechocystis]]
-** Source: [[annotation-experimental_annotation]]
+*** [[manual-primary_network]]
-*** Assignment: ec-number
+* [[DCDPKIN-RXN]]
-* Reaction: [[RXN-10701]]
+** 6 associated gene(s):
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_9290]]
-*** Assignment: ec-number
+*** [[Tiso_gene_17271]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_17272]]
-*** Assignment: ec-number
+*** [[Tiso_gene_195]]
-* Reaction: [[RXN-11246]]
+*** [[Tiso_gene_18224]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_16529]]
-*** Assignment: ec-number
+** 6 reconstruction source(s) associated:
-** Source: [[annotation-experimental_annotation]]
+*** [[annotation-experimental_annotation]]
-*** Assignment: ec-number
+*** [[orthology-esiliculosus]]
-* Reaction: [[RXN-12565]]
+*** [[annotation-in-silico_annotation]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[orthology-athaliana]]
-*** Assignment: ec-number
+*** [[orthology-synechocystis]]
-** Source: [[annotation-experimental_annotation]]
+*** [[manual-primary_network]]
-*** Assignment: ec-number
+* [[DTDPKIN-RXN]]
-* Reaction: [[RXN-12710]]
+** 6 associated gene(s):
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_18224]]
-*** Assignment: ec-number
+*** [[Tiso_gene_16529]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_195]]
-*** Assignment: ec-number
+*** [[Tiso_gene_17271]]
-* Reaction: [[RXN-13617]]
+*** [[Tiso_gene_17272]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_9290]]
-*** Assignment: ec-number
+** 6 reconstruction source(s) associated:
-** Source: [[annotation-experimental_annotation]]
+*** [[annotation-experimental_annotation]]
-*** Assignment: ec-number
+*** [[orthology-esiliculosus]]
-* Reaction: [[RXN-14268]]
+*** [[annotation-in-silico_annotation]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[orthology-athaliana]]
-*** Assignment: ec-number
+*** [[orthology-synechocystis]]
-** Source: [[annotation-experimental_annotation]]
+*** [[manual-primary_network]]
-*** Assignment: ec-number
+* [[DTMPKI-RXN]]
-* Reaction: [[RXN-14274]]
+** 1 associated gene(s):
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_3755]]
-*** Assignment: ec-number
+** 3 reconstruction source(s) associated:
-** Source: [[annotation-experimental_annotation]]
+*** [[annotation-in-silico_annotation]]
-*** Assignment: ec-number
+*** [[manual-primary_network]]
-* Reaction: [[RXN-14277]]
+*** [[annotation-experimental_annotation]]
-** Source: [[annotation-in-silico_annotation]]
+* [[DUDPKIN-RXN]]
-*** Assignment: ec-number
+** 6 associated gene(s):
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_17272]]
-*** Assignment: ec-number
+*** [[Tiso_gene_16529]]
-* Reaction: [[RXN-14394]]
+*** [[Tiso_gene_18224]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_195]]
-*** Assignment: ec-number
+*** [[Tiso_gene_9290]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_17271]]
-*** Assignment: ec-number
+** 6 reconstruction source(s) associated:
-* Reaction: [[RXN-14774]]
+*** [[annotation-experimental_annotation]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[orthology-esiliculosus]]
-*** Assignment: ec-number
+*** [[annotation-in-silico_annotation]]
-** Source: [[annotation-experimental_annotation]]
+*** [[orthology-athaliana]]
-*** Assignment: ec-number
+*** [[orthology-synechocystis]]
-* Reaction: [[RXN-14788]]
+*** [[manual-primary_network]]
-** Source: [[annotation-in-silico_annotation]]
+* [[DUTP-PYROP-RXN]]
-*** Assignment: ec-number
+** 2 associated gene(s):
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_18793]]
-*** Assignment: ec-number
+*** [[Tiso_gene_18792]]
-* Reaction: [[RXN-14793]]
+** 3 reconstruction source(s) associated:
-** Source: [[annotation-in-silico_annotation]]
+*** [[orthology-athaliana]]
-*** Assignment: ec-number
+*** [[annotation-in-silico_annotation]]
-** Source: [[annotation-experimental_annotation]]
+*** [[manual-primary_network]]
-*** Assignment: ec-number
+* [[RXN-12195]]
-* Reaction: [[RXN-14799]]
+** 101 associated gene(s):
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_1960]]
-*** Assignment: ec-number
+*** [[Tiso_gene_11098]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_12899]]
-*** Assignment: ec-number
+*** [[Tiso_gene_2924]]
-* Reaction: [[RXN-14803]]
+*** [[Tiso_gene_14226]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_674]]
-*** Assignment: ec-number
+*** [[Tiso_gene_8601]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_8584]]
-*** Assignment: ec-number
+*** [[Tiso_gene_9959]]
-* Reaction: [[RXN-16137]]
+*** [[Tiso_gene_2929]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_9423]]
-*** Assignment: ec-number
+*** [[Tiso_gene_873]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_8763]]
-*** Assignment: ec-number
+*** [[Tiso_gene_9004]]
-* Reaction: [[RXN-17116]]
+*** [[Tiso_gene_14816]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_5529]]
-*** Assignment: ec-number
+*** [[Tiso_gene_4192]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_8859]]
-*** Assignment: ec-number
+*** [[Tiso_gene_14227]]
-* Reaction: [[RXN-17778]]
+*** [[Tiso_gene_9234]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_38]]
-*** Assignment: ec-number
+*** [[Tiso_gene_2889]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_4194]]
-*** Assignment: ec-number
+*** [[Tiso_gene_15043]]
-* Reaction: [[RXN-17782]]
+*** [[Tiso_gene_537]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_4026]]
-*** Assignment: ec-number
+*** [[Tiso_gene_14646]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_195]]
-*** Assignment: ec-number
+*** [[Tiso_gene_3653]]
-* Reaction: [[RXN-17787]]
+*** [[Tiso_gene_1444]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_8949]]
-*** Assignment: ec-number
+*** [[Tiso_gene_17616]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_546]]
-*** Assignment: ec-number
+*** [[Tiso_gene_13738]]
-* Reaction: [[RXN-17791]]
+*** [[Tiso_gene_538]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_2449]]
-*** Assignment: ec-number
+*** [[Tiso_gene_1959]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_7387]]
-*** Assignment: ec-number
+*** [[Tiso_gene_2447]]
-* Reaction: [[RXN-17795]]
+*** [[Tiso_gene_20353]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_5166]]
-*** Assignment: ec-number
+*** [[Tiso_gene_4596]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_2448]]
-*** Assignment: ec-number
+*** [[Tiso_gene_5525]]
-* Reaction: [[RXN-17799]]
+*** [[Tiso_gene_12148]]
-** Source: [[annotation-in-silico_annotation]]
+*** [[Tiso_gene_20327]]
-*** Assignment: ec-number
+*** [[Tiso_gene_11012]]
-** Source: [[annotation-experimental_annotation]]
+*** [[Tiso_gene_2176]]
-*** Assignment: ec-number
+*** [[Tiso_gene_13325]]
-== Pathways associated ==
+*** [[Tiso_gene_13268]]
-* [[PWY-6435]]
+*** [[Tiso_gene_12149]]
-* [[PWY-7654]]
+*** [[Tiso_gene_2451]]
-* [[PWY66-391]]
+*** [[Tiso_gene_6614]]
-* [[PWY-7606]]
+*** [[Tiso_gene_2897]]
-* [[PWY-7337]]
+*** [[Tiso_gene_4436]]
-* [[PWY-7340]]
+*** [[Tiso_gene_623]]
-* [[PWY-7338]]
+*** [[Tiso_gene_9926]]
-* [[PWY-7094]]
+*** [[Tiso_gene_6181]]
-* [[PWY-6946]]
+*** [[Tiso_gene_16478]]
-* [[FAO-PWY]]
+*** [[Tiso_gene_6180]]
-* [[PWY-735]]
+*** [[Tiso_gene_1984]]
-* [[PWY-5136]]
+*** [[Tiso_gene_2452]]
-* [[PWY-7726]]
+*** [[Tiso_gene_15465]]
-* [[PWY-6863]]
+*** [[Tiso_gene_4092]]
-* [[PWY-7339]]
+*** [[Tiso_gene_7745]]
-* [[PWY-6948]]
+*** [[Tiso_gene_829]]
-* [[PWY-7288]]
+*** [[Tiso_gene_250]]
-* [[PWY-6945]]
+*** [[Tiso_gene_1541]]
+*** [[Tiso_gene_199]]
+*** [[Tiso_gene_7123]]
+*** [[Tiso_gene_10282]]
+*** [[Tiso_gene_9114]]
+*** [[Tiso_gene_2450]]
+*** [[Tiso_gene_14474]]
+*** [[Tiso_gene_8461]]
+*** [[Tiso_gene_4437]]
+*** [[Tiso_gene_4726]]
+*** [[Tiso_gene_9659]]
+*** [[Tiso_gene_8950]]
+*** [[Tiso_gene_2068]]
+*** [[Tiso_gene_9243]]
+*** [[Tiso_gene_13264]]
+*** [[Tiso_gene_4330]]
+*** [[Tiso_gene_13681]]
+*** [[Tiso_gene_1610]]
+*** [[Tiso_gene_13653]]
+*** [[Tiso_gene_17449]]
+*** [[Tiso_gene_10221]]
+*** [[Tiso_gene_19098]]
+*** [[Tiso_gene_4155]]
+*** [[Tiso_gene_8164]]
+*** [[Tiso_gene_19350]]
+*** [[Tiso_gene_2631]]
+*** [[Tiso_gene_17751]]
+*** [[Tiso_gene_1611]]
+*** [[Tiso_gene_3287]]
+*** [[Tiso_gene_7734]]
+*** [[Tiso_gene_572]]
+*** [[Tiso_gene_1291]]
+*** [[Tiso_gene_14239]]
+*** [[Tiso_gene_8860]]
+** 3 reconstruction source(s) associated:
+*** [[annotation-experimental_annotation]]
+*** [[annotation-in-silico_annotation]]
+*** [[orthology-esiliculosus]]
+* [[THYMIDYLATESYN-RXN]]
+** 2 associated gene(s):
+*** [[Tiso_gene_7708]]
+*** [[Tiso_gene_18478]]
+** 2 reconstruction source(s) associated:
+*** [[manual-primary_network]]
+*** [[annotation-in-silico_annotation]]
+* [[UDPREDUCT-RXN]]
+** 4 associated gene(s):
+*** [[Tiso_gene_9915]]
+*** [[Tiso_gene_9916]]
+*** [[Tiso_gene_10138]]
+*** [[Tiso_gene_10617]]
+** 6 reconstruction source(s) associated:
+*** [[annotation-experimental_annotation]]
+*** [[orthology-esiliculosus]]
+*** [[annotation-in-silico_annotation]]
+*** [[orthology-athaliana]]
+*** [[orthology-synechocystis]]
+*** [[manual-primary_network]]
+== Reaction(s) not found ==
 == External links  ==
-{{#set: right end position=4501}}
+* ECOCYC:
-{{#set: transcription direction=POSITIVE}}
+** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7184 PWY-7184]
-{{#set: left end position=1467}}
+{{#set: taxonomic range=TAX-2157}}
-{{#set: centisome position=9.21193    }}
+{{#set: taxonomic range=TAX-2759}}
-{{#set: reaction associated=KETOACYLCOATHIOL-RXN|RXN-10699|RXN-10700|RXN-10701|RXN-11246|RXN-12565|RXN-12710|RXN-13617|RXN-14268|RXN-14274|RXN-14277|RXN-14394|RXN-14774|RXN-14788|RXN-14793|RXN-14799|RXN-14803|RXN-16137|RXN-17116|RXN-17778|RXN-17782|RXN-17787|RXN-17791|RXN-17795|RXN-17799}}
+{{#set: taxonomic range=TAX-2}}
-{{#set: pathway associated=PWY-6435|PWY-7654|PWY66-391|PWY-7606|PWY-7337|PWY-7340|PWY-7338|PWY-7094|PWY-6946|FAO-PWY|PWY-735|PWY-5136|PWY-7726|PWY-6863|PWY-7339|PWY-6948|PWY-7288|PWY-6945}}
+{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis I}}
+{{#set: reaction found=9}}
+{{#set: total reaction=9}}
+{{#set: completion rate=100.0}}