Difference between revisions of "CPD-13534"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribof...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** carotene_isomerase
+
** riboflavin_biosynthesis_protein
−
** carotenoid_isomerase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
+
** [http://enzyme.expasy.org/EC/4.1.99.12 EC-4.1.99.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
+
** 1 [[RIBULOSE-5P]][c] '''=>''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FORMATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
+
** 1 D-ribulose 5-phosphate[c] '''=>''' 1 1-deoxy-L-glycero-tetrulose 4-phosphate[c] '''+''' 1 H+[c] '''+''' 1 formate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_915]]
+
* [[Tiso_gene_14275]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
* [[Tiso_gene_15802]]
+
* [[Tiso_gene_19932]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13369]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_916]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13367]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_917]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
+
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18457 18457]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07281 R07281]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carotene_isomerase}}
+
{{#set: common name=riboflavin_biosynthesis_protein}}
−
{{#set: common name=carotenoid_isomerase}}
+
{{#set: ec number=EC-4.1.99.12}}
−
{{#set: ec number=EC-5.2.1.13}}
+
{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932}}
−
{{#set: gene associated=Tiso_gene_915|Tiso_gene_15802|Tiso_gene_13369|Tiso_gene_916|Tiso_gene_13367|Tiso_gene_917}}
+
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: in pathway=PWY-6475}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=in-silico_annotation}}
 
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:23, 10 January 2018

Reaction DIOHBUTANONEPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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