Difference between revisions of "Tiso gene 10809"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAPOXNPHOSPHN-RXN GAPOXNPHOSPHN-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec numbe...")
(Created page with "Category:Gene == Gene Tiso_gene_10809 == * right end position: ** 3307 * transcription direction: ** POSITIVE * left end position: ** 36 * centisome position: ** 0.3136435...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAPOXNPHOSPHN-RXN GAPOXNPHOSPHN-RXN] ==
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== Gene Tiso_gene_10809 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 3307
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* common name:
+
* transcription direction:
−
** ORF
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** POSITIVE
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* ec number:
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* left end position:
−
** [http://enzyme.expasy.org/EC/1.2.1.12 EC-1.2.1.12]
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** 36
 +
* centisome position:
 +
** 0.3136435   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
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* With identifiers:
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* Reaction: [[ISOCITDEH-RXN]]
−
** 1 [[Pi]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[PROTON]][c]
+
−
* With common name(s):
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−
** 1 phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 H+[c]
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−
 
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−
== Genes associated with this reaction  ==
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−
Genes have been associated with this reaction based on different elements listed below.
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−
* Gene: [[Tiso_gene_20000]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-synechocystis]]
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−
** Source: [[orthology-esiliculosus]]
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−
** Source: [[orthology-creinhardtii]]
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−
** Source: [[orthology-creinhardtii]]
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−
* Gene: [[Tiso_gene_235]]
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−
** Source: [[orthology-synechocystis]]
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−
** Source: [[orthology-creinhardtii]]
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−
** Source: [[orthology-creinhardtii]]
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−
* Gene: [[Tiso_gene_10646]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-synechocystis]]
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−
** Source: [[orthology-esiliculosus]]
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−
** Source: [[orthology-creinhardtii]]
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−
** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_3344]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_6766]]
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-8642]]
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** Source: [[annotation-in-silico_annotation]]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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** Source: [[annotation-experimental_annotation]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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*** Assignment: ec-number
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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* Reaction: [[RXN-9951]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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−
** '''8''' reactions found over '''12''' reactions in the full pathway
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−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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−
** '''11''' reactions found over '''15''' reactions in the full pathway
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−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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−
** '''10''' reactions found over '''10''' reactions in the full pathway
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−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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−
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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−
*** Tool: [[pantograph]]
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−
** Source: [[orthology-creinhardtii]]
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−
*** Tool: [[pantograph]]
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−
** Source: [[orthology-synechocystis]]
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−
*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-5913]]
 +
* [[REDCITCYC]]
 +
* [[PWY-7268]]
 +
* [[P23-PWY]]
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* [[P105-PWY]]
 +
* [[PWY-6969]]
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* [[FERMENTATION-PWY]]
 +
* [[PWY-6728]]
 +
* [[PWY-6549]]
 +
* [[PWY-7254]]
 +
* [[PWY-7124]]
 +
* [[TCA]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3307}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10300 10300]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=36}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01061 R01061]
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{{#set: centisome position=0.3136435    }}
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* UNIPROT:
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{{#set: reaction associated=ISOCITDEH-RXN|RXN-8642|RXN-9951}}
−
** [http://www.uniprot.org/uniprot/P07486 P07486]
+
{{#set: pathway associated=PWY-5913|REDCITCYC|PWY-7268|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|PWY-7124|TCA}}
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** [http://www.uniprot.org/uniprot/P08477 P08477]
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** [http://www.uniprot.org/uniprot/P17878 P17878]
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−
** [http://www.uniprot.org/uniprot/Q01651 Q01651]
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** [http://www.uniprot.org/uniprot/Q27890 Q27890]
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** [http://www.uniprot.org/uniprot/Q27820 Q27820]
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** [http://www.uniprot.org/uniprot/Q7M188 Q7M188]
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** [http://www.uniprot.org/uniprot/Q7LZR1 Q7LZR1]
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−
** [http://www.uniprot.org/uniprot/Q58546 Q58546]
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−
** [http://www.uniprot.org/uniprot/P55971 P55971]
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** [http://www.uniprot.org/uniprot/P46795 P46795]
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** [http://www.uniprot.org/uniprot/P07487 P07487]
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−
** [http://www.uniprot.org/uniprot/Q01558 Q01558]
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** [http://www.uniprot.org/uniprot/Q7M187 Q7M187]
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** [http://www.uniprot.org/uniprot/O25902 O25902]
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** [http://www.uniprot.org/uniprot/Q9JWT8 Q9JWT8]
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** [http://www.uniprot.org/uniprot/P29272 P29272]
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** [http://www.uniprot.org/uniprot/P47543 P47543]
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** [http://www.uniprot.org/uniprot/O83816 O83816]
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** [http://www.uniprot.org/uniprot/P20445 P20445]
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** [http://www.uniprot.org/uniprot/P26517 P26517]
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** [http://www.uniprot.org/uniprot/P09124 P09124]
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** [http://www.uniprot.org/uniprot/P00362 P00362]
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** [http://www.uniprot.org/uniprot/P00358 P00358]
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** [http://www.uniprot.org/uniprot/P00359 P00359]
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** [http://www.uniprot.org/uniprot/P00360 P00360]
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** [http://www.uniprot.org/uniprot/P00356 P00356]
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** [http://www.uniprot.org/uniprot/P0A9B2 P0A9B2]
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** [http://www.uniprot.org/uniprot/P0A9B6 P0A9B6]
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−
** [http://www.uniprot.org/uniprot/P17721 P17721]
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** [http://www.uniprot.org/uniprot/P04406 P04406]
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** [http://www.uniprot.org/uniprot/P17244 P17244]
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** [http://www.uniprot.org/uniprot/P04796 P04796]
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** [http://www.uniprot.org/uniprot/P19089 P19089]
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−
** [http://www.uniprot.org/uniprot/P26518 P26518]
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** [http://www.uniprot.org/uniprot/P26988 P26988]
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** [http://www.uniprot.org/uniprot/P04970 P04970]
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** [http://www.uniprot.org/uniprot/P17329 P17329]
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** [http://www.uniprot.org/uniprot/P17330 P17330]
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** [http://www.uniprot.org/uniprot/P17331 P17331]
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** [http://www.uniprot.org/uniprot/P08439 P08439]
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** [http://www.uniprot.org/uniprot/P00357 P00357]
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** [http://www.uniprot.org/uniprot/P16858 P16858]
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** [http://www.uniprot.org/uniprot/P26521 P26521]
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** [http://www.uniprot.org/uniprot/P26520 P26520]
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** [http://www.uniprot.org/uniprot/P26519 P26519]
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** [http://www.uniprot.org/uniprot/P04797 P04797]
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** [http://www.uniprot.org/uniprot/P25861 P25861]
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** [http://www.uniprot.org/uniprot/P00361 P00361]
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** [http://www.uniprot.org/uniprot/P09317 P09317]
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** [http://www.uniprot.org/uniprot/P22512 P22512]
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** [http://www.uniprot.org/uniprot/P22513 P22513]
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** [http://www.uniprot.org/uniprot/P10097 P10097]
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** [http://www.uniprot.org/uniprot/P17819 P17819]
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** [http://www.uniprot.org/uniprot/P28844 P28844]
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** [http://www.uniprot.org/uniprot/P08735 P08735]
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** [http://www.uniprot.org/uniprot/P09316 P09316]
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** [http://www.uniprot.org/uniprot/Q9JX51 Q9JX51]
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** [http://www.uniprot.org/uniprot/O67161 O67161]
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** [http://www.uniprot.org/uniprot/P44304 P44304]
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** [http://www.uniprot.org/uniprot/O34425 O34425]
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** [http://www.uniprot.org/uniprot/P64178 P64178]
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** [http://www.uniprot.org/uniprot/Q46450 Q46450]
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** [http://www.uniprot.org/uniprot/P50321 P50321]
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** [http://www.uniprot.org/uniprot/P50322 P50322]
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** [http://www.uniprot.org/uniprot/P34917 P34917]
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** [http://www.uniprot.org/uniprot/P34918 P34918]
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** [http://www.uniprot.org/uniprot/Q07234 Q07234]
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** [http://www.uniprot.org/uniprot/P24748 P24748]
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** [http://www.uniprot.org/uniprot/P24746 P24746]
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** [http://www.uniprot.org/uniprot/P24749 P24749]
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** [http://www.uniprot.org/uniprot/P24751 P24751]
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** [http://www.uniprot.org/uniprot/P24750 P24750]
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** [http://www.uniprot.org/uniprot/Q60143 Q60143]
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** [http://www.uniprot.org/uniprot/Q64467 Q64467]
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** [http://www.uniprot.org/uniprot/P46406 P46406]
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** [http://www.uniprot.org/uniprot/Q59800 Q59800]
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** [http://www.uniprot.org/uniprot/P80534 P80534]
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** [http://www.uniprot.org/uniprot/Q9UW96 Q9UW96]
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** [http://www.uniprot.org/uniprot/P32809 P32809]
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** [http://www.uniprot.org/uniprot/P32810 P32810]
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** [http://www.uniprot.org/uniprot/P20287 P20287]
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** [http://www.uniprot.org/uniprot/P35143 P35143]
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** [http://www.uniprot.org/uniprot/P25858 P25858]
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** [http://www.uniprot.org/uniprot/P10618 P10618]
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** [http://www.uniprot.org/uniprot/Q7M517 Q7M517]
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** [http://www.uniprot.org/uniprot/Q7M516 Q7M516]
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** [http://www.uniprot.org/uniprot/Q09054 Q09054]
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** [http://www.uniprot.org/uniprot/Q43247 Q43247]
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** [http://www.uniprot.org/uniprot/P23722 P23722]
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** [http://www.uniprot.org/uniprot/P17729 P17729]
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** [http://www.uniprot.org/uniprot/Q01597 Q01597]
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** [http://www.uniprot.org/uniprot/P32637 P32637]
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** [http://www.uniprot.org/uniprot/P29497 P29497]
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** [http://www.uniprot.org/uniprot/P32638 P32638]
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** [http://www.uniprot.org/uniprot/P32635 P32635]
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** [http://www.uniprot.org/uniprot/P32636 P32636]
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** [http://www.uniprot.org/uniprot/Q59309 Q59309]
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** [http://www.uniprot.org/uniprot/P34783 P34783]
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** [http://www.uniprot.org/uniprot/Q00584 Q00584]
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** [http://www.uniprot.org/uniprot/Q42671 Q42671]
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** [http://www.uniprot.org/uniprot/P34920 P34920]
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** [http://www.uniprot.org/uniprot/P39460 P39460]
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** [http://www.uniprot.org/uniprot/Q37265 Q37265]
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** [http://www.uniprot.org/uniprot/Q37264 Q37264]
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** [http://www.uniprot.org/uniprot/Q01077 Q01077]
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** [http://www.uniprot.org/uniprot/P54270 P54270]
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** [http://www.uniprot.org/uniprot/Q48335 Q48335]
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** [http://www.uniprot.org/uniprot/Q43833 Q43833]
+
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** [http://www.uniprot.org/uniprot/Q59906 Q59906]
+
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** [http://www.uniprot.org/uniprot/P46713 P46713]
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** [http://www.uniprot.org/uniprot/P75358 P75358]
+
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** [http://www.uniprot.org/uniprot/Q7M2K2 Q7M2K2]
+
−
** [http://www.uniprot.org/uniprot/Q43359 Q43359]
+
−
** [http://www.uniprot.org/uniprot/O68075 O68075]
+
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** [http://www.uniprot.org/uniprot/Q08060 Q08060]
+
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** [http://www.uniprot.org/uniprot/O49222 O49222]
+
−
** [http://www.uniprot.org/uniprot/P34922 P34922]
+
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** [http://www.uniprot.org/uniprot/O04106 O04106]
+
−
** [http://www.uniprot.org/uniprot/P49644 P49644]
+
−
** [http://www.uniprot.org/uniprot/O32755 O32755]
+
−
** [http://www.uniprot.org/uniprot/P34924 P34924]
+
−
** [http://www.uniprot.org/uniprot/O59841 O59841]
+
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** [http://www.uniprot.org/uniprot/P78958 P78958]
+
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** [http://www.uniprot.org/uniprot/P54118 P54118]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.2.1.12}}
+
−
{{#set: gene associated=Tiso_gene_20000|Tiso_gene_235|Tiso_gene_10646|Tiso_gene_3344|Tiso_gene_6766}}
+
−
{{#set: in pathway=PWY-1042|PWY66-399|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|SUCSYN-PWY|P124-PWY|ANAGLYCOLYSIS-PWY|P122-PWY|P185-PWY|PWY-5484|PWY-7003}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:29, 21 March 2018

Gene Tiso_gene_10809

  • right end position:
    • 3307
  • transcription direction:
    • POSITIVE
  • left end position:
    • 36
  • centisome position:
    • 0.3136435
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10809&oldid=41876"