Difference between revisions of "CYSTEINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/5.1.3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** cysteinyl-trna
 +
** cysteine--trna_ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18]
+
** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
+
** 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 GDP-&alpha;-D-mannose[c] '''<=>''' 1 GDP-&beta;-L-galactose[c]
+
** 1 L-cysteine[c] '''+''' 1 a tRNAcys[c] '''+''' 1 ATP[c] '''=>''' 1 an L-cysteinyl-[tRNAcys][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_6621]]
+
* Gene: [[Tiso_gene_10881]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17657]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11144 11144]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: ec number=EC-5.1.3.18}}
+
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
−
{{#set: gene associated=Tiso_gene_6621}}
+
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
−
{{#set: in pathway=PWY4FS-12|PWY4FS-13|PWY-5115|PWY-882}}
+
** [http://www.uniprot.org/uniprot/P43816 P43816]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/O29836 O29836]
−
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
+
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/O58370 O58370]
 +
** [http://www.uniprot.org/uniprot/O83129 O83129]
 +
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
 +
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 +
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 +
** [http://www.uniprot.org/uniprot/P41259 P41259]
 +
** [http://www.uniprot.org/uniprot/O51545 O51545]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 +
** [http://www.uniprot.org/uniprot/O67163 O67163]
 +
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 +
** [http://www.uniprot.org/uniprot/P47495 P47495]
 +
** [http://www.uniprot.org/uniprot/P75423 P75423]
 +
** [http://www.uniprot.org/uniprot/P74330 P74330]
 +
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 +
** [http://www.uniprot.org/uniprot/P21888 P21888]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=cysteinyl-trna}}
 +
{{#set: common name=cysteine--trna_ligase}}
 +
{{#set: ec number=EC-6.1.1.16}}
 +
{{#set: gene associated=Tiso_gene_10881|Tiso_gene_17657}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:30, 21 March 2018

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cysteinyl-trna
    • cysteine--trna_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-cysteine[c] + 1 a tRNAcys[c] + 1 ATP[c] => 1 an L-cysteinyl-[tRNAcys][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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