Difference between revisions of "LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN] == * direction: ** REV...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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* common name:
 
* common name:
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** TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
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** acyl-coenzyme_a_oxidase
 +
** acyl-_dehydrogenase
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** ORF
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** acyl-CoA_dehydrogenase
 +
* ec number:
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** [http://enzyme.expasy.org/EC/1.3.8.8 EC-1.3.8.8]
 
* Synonym(s):
 
* Synonym(s):
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** citric acid cycle
 
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** tricarboxylic acid cycle
 
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** Szent-Gyorgyi-Krebs cycle
 
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** Krebs cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''12''' reactions in the full pathway
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* With identifiers:
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* [[ACONITATEDEHYDR-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[Long-Chain-234-Saturated-acyl-CoAs]][c] '''<=>''' 1 [[Long-Chain-Trans-23-Dehydroacyl-CoA]][c] '''+''' 1 [[ETF-Reduced]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_13007]]
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** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 a long-chain 2,3,4-saturated fatty acyl CoA[c] '''<=>''' 1 a long-chain trans-2,3-dehydroacyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_16631]]
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* [[ACONITATEHYDR-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13007]]
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* Gene: [[Tiso_gene_6475]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_18566]]
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* [[CITSYN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_18030]]
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* Gene: [[Tiso_gene_17967]]
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*** [[Tiso_gene_9601]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9603]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_9602]]
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* Gene: [[Tiso_gene_883]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_5991]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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*** Assignment: EC-NUMBER
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** 2 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_3691]]
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== Reconstruction information  ==
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*** [[Tiso_gene_6720]]
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* Category: [[annotation]]
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** 6 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCIT-CLEAV-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14008]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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−
*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14377]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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−
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12912 RXN-12912]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1117}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3035}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00392 R00392]
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{{#set: taxonomic range=TAX-1224}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-201174}}
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** [http://www.uniprot.org/uniprot/P15650 P15650]
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{{#set: common name=TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)}}
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** [http://www.uniprot.org/uniprot/Q8IUN8 Q8IUN8]
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{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction found=9}}
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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{{#set: total reaction=12}}
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{{#set: common name=acyl-_dehydrogenase}}
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{{#set: completion rate=75.0}}
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{{#set: common name=ORF}}
 +
{{#set: common name=acyl-CoA_dehydrogenase}}
 +
{{#set: ec number=EC-1.3.8.8}}
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{{#set: gene associated=Tiso_gene_16631|Tiso_gene_6475|Tiso_gene_18566|Tiso_gene_17967|Tiso_gene_883|Tiso_gene_5991}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:32, 21 March 2018

Reaction LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • acyl-coenzyme_a_oxidase
    • acyl-_dehydrogenase
    • ORF
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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