Difference between revisions of "RXN-9542"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9542 RXN-9542] == * direction: ** LEFT-TO-RIGHT * common name: ** trans hexadecenoyl-[acp] redu...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9542 RXN-9542] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase)
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** trans hexadecenoyl-[acp] reductase (NADPH, B-specific)
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** polyketide_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[RXN-16112]]
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** 1 [[2-Hexadecenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Palmitoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_9871]]
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** 1 a trans hexadecenoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 a palmitoyl-[acp][c] '''+''' 1 NADP+[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-17109]]
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* Gene: [[Tiso_gene_10876]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9871]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_136]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* [[RXN-17113]]
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* Gene: [[Tiso_gene_135]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_18566]]
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_13394]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-17115]]
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*** Assignment: EC-NUMBER
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** 0 associated gene:
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* Gene: [[Tiso_gene_500]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_10778]]
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* [[RXN-17116]]
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** Source: [[orthology-synechocystis]]
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** 5 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_3856]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** [[Tiso_gene_17451]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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*** [[Tiso_gene_15327]]
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== Reconstruction information  ==
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*** [[Tiso_gene_10116]]
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* Category: [[orthology]]
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*** [[Tiso_gene_3855]]
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** Source: [[orthology-synechocystis]]
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** 2 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16079 RXN-16079]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16081 RXN-16081]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16113 RXN-16113]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16114 RXN-16114]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17110 RXN-17110]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17111 RXN-17111]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17112 RXN-17112]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17114 RXN-17114]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase)}}
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{{#set: common name=trans hexadecenoyl-[acp] reductase (NADPH, B-specific)}}
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{{#set: reaction found=5}}
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{{#set: common name=polyketide_synthase}}
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{{#set: total reaction=13}}
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{{#set: ec number=EC-1.3.1.10}}
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{{#set: completion rate=38.0}}
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{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-1.3.1.39}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: gene associated=Tiso_gene_10876|Tiso_gene_136|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_10778}}
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{{#set: in pathway=PWY-5994}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:33, 21 March 2018

Reaction RXN-9542

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"trans hexadecenoyl-[acp] reductase (NADPH, B-specific)" cannot be used as a page name in this wiki.






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