Difference between revisions of "RXN3O-1803"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200795 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase ** pol...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200795 TAX-200795]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183924 TAX-183924]
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* common name:
 
* common name:
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** glyoxylate assimilation
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** 3-oxoacyl-synthase
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** polyketide_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-stearoyl-ACPs]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_2812]]
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** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 a palmitoyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c] '''+''' 1 a 3-oxo-stearoyl-[acp][c]
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*** [[Tiso_gene_3800]]
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*** [[Tiso_gene_5029]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_7965]]
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Genes have been associated with this reaction based on different elements listed below.
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** 5 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_135]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_5939]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN-6383]]
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** Source: [[annotation-experimental_annotation]]
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** 3 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5857]]
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* Gene: [[Tiso_gene_13394]]
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*** [[Tiso_gene_16703]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14257]]
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*** Assignment: EC-NUMBER
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_14485]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_19302]]
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* [http://metacyc.org/META/NEW-IMAGE?object=CITRAMALYL-COA-LYASE-RXN CITRAMALYL-COA-LYASE-RXN]
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** Source: [[orthology-athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13230 RXN-13230]
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** Source: [[orthology-synechocystis]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8960 RXN-8960]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8961 RXN-8961]
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* Gene: [[Tiso_gene_500]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8963 RXN-8963]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8965 RXN-8965]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8974 RXN-8974]
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* Gene: [[Tiso_gene_10876]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9086 RXN-9086]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9087 RXN-9087]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15991]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-200795}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-183924}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: common name=glyoxylate assimilation}}
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{{#set: common name=polyketide_synthase}}
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{{#set: reaction found=2}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: total reaction=11}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: completion rate=18.0}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_5939|Tiso_gene_13394|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_15991}}
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{{#set: in pathway=PWY3O-355}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:37, 21 March 2018

Reaction RXN3O-1803

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxoacyl-synthase
    • polyketide_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY3O-355, stearate biosynthesis III (fungi): PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN3O-1803&oldid=42769"