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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == | + | == Gene Tiso_gene_4585 == |
| − | * direction: | + | * right end position: |
| − | ** REVERSIBLE | + | ** 3049 |
| − | * common name: | + | * transcription direction: |
| − | ** cis-aconitate hydratase | + | ** NEGATIVE |
| | + | * left end position: |
| | + | ** 1248 |
| | + | * centisome position: |
| | + | ** 6.599334 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[RXN-15556]] |
| − | ** 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | * With common name(s):
| + | *** Assignment: ec-number |
| − | ** 1 cis-aconitate[c] '''+''' 1 H2O[c] '''<=>''' 1 D-threo-isocitrate[c]
| + | * Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]] |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_13007]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]] | + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
| + | |
| − | ** '''9''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
| + | |
| − | ** '''9''' reactions found over '''12''' reactions in the full pathway | + | |
| − | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
| + | |
| − | ** '''5''' reactions found over '''12''' reactions in the full pathway
| + | |
| − | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
| + | |
| − | ** '''7''' reactions found over '''10''' reactions in the full pathway
| + | |
| − | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
| + | |
| − | ** '''7''' reactions found over '''12''' reactions in the full pathway
| + | |
| − | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
| + | |
| − | ** '''9''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
| + | |
| − | ** '''6''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
| + | |
| − | ** '''9''' reactions found over '''16''' reactions in the full pathway
| + | |
| − | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
| + | |
| − | ** '''11''' reactions found over '''18''' reactions in the full pathway
| + | |
| − | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
| + | |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
| + | |
| − | ** '''7''' reactions found over '''10''' reactions in the full pathway
| + | |
| − | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
| + | |
| − | ** '''10''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: ec-number |
| | + | == Pathways associated == |
| | + | * [[PWY-7511]] |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=3049}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22144 22144]
| + | {{#set: transcription direction=NEGATIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=1248}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
| + | {{#set: centisome position=6.599334 }} |
| − | {{#set: direction=REVERSIBLE}} | + | {{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}} |
| − | {{#set: common name=cis-aconitate hydratase}} | + | {{#set: pathway associated=PWY-7511}} |
| − | {{#set: gene associated=Tiso_gene_13007}} | + | |
| − | {{#set: in pathway=PWY-5913|PWY-6969|PWY-6549|PWY-5392|TCA|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|PWY-5690}} | + | |
| − | {{#set: reconstruction category=annotation}} | + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}} | + | |
