Difference between revisions of "RXN-18301"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18301 RXN-18301] == * direction: ** LEFT-TO-RIGHT * common name: ** galactose-3-o-sulfotransfer...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18301 RXN-18301] ==
* taxonomic range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** stachyose degradation
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** galactose-3-o-sulfotransferase_2-like
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.8.2.11 EC-2.8.2.11]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''7''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
* [[GALACTOKIN-RXN]]
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** 1 [[A-GALACTOSYLCERAMIDE]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[galactosylceramide-sulfate]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-5-ADP]][c]
** 5 associated gene(s):
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* With common name(s):
*** [[Tiso_gene_11795]]
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** 1 a β-D-galactosyl-N-acylsphingosine[c] '''+''' 1 3'-phosphoadenylyl-sulfate[c] '''=>''' 1 a galactosylceramide sulfate[c] '''+''' 1 H+[c] '''+''' 1 adenosine 3',5'-bisphosphate[c]
*** [[Tiso_gene_12191]]
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*** [[Tiso_gene_5041]]
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== Genes associated with this reaction  ==
*** [[Tiso_gene_10797]]
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Genes have been associated with this reaction based on different elements listed below.
*** [[Tiso_gene_5042]]
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* Gene: [[Tiso_gene_13030]]
** 5 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
*** [[orthology-athaliana]]
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== Pathways  ==
*** [[orthology-creinhardtii]]
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* [[PWY-7840]], gala-series glycosphingolipids biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7840 PWY-7840]
*** [[orthology-esiliculosus]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
* [[GALACTURIDYLYLTRANS-RXN]]
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* Category: [[annotation]]
** 1 associated gene(s):
+
** Source: [[annotation-in-silico_annotation]]
*** [[Tiso_gene_2435]]
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*** Tool: [[pathwaytools]]
** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[GLUC1PURIDYLTRANS-RXN]]
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** 14 associated gene(s):
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*** [[Tiso_gene_6459]]
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*** [[Tiso_gene_4816]]
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*** [[Tiso_gene_17531]]
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*** [[Tiso_gene_5879]]
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*** [[Tiso_gene_17566]]
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*** [[Tiso_gene_16930]]
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*** [[Tiso_gene_14796]]
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*** [[Tiso_gene_9110]]
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*** [[Tiso_gene_13477]]
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*** [[Tiso_gene_7440]]
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*** [[Tiso_gene_11401]]
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*** [[Tiso_gene_6457]]
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*** [[Tiso_gene_6458]]
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*** [[Tiso_gene_7102]]
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** 4 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11501]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_16101]]
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*** [[Tiso_gene_4615]]
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*** [[Tiso_gene_8673]]
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*** [[Tiso_gene_3392]]
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** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-creinhardtii]]
+
*** [[orthology-esiliculosus]]
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* [[RXN-11502]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_16101]]
+
*** [[Tiso_gene_4615]]
+
*** [[Tiso_gene_3392]]
+
*** [[Tiso_gene_8673]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
+
* [[UDPGLUCEPIM-RXN]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_9823]]
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*** [[Tiso_gene_15395]]
+
*** [[Tiso_gene_3236]]
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*** [[Tiso_gene_10797]]
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** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[UTPHEXPURIDYLYLTRANS-RXN]]
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** 6 associated gene(s):
+
*** [[Tiso_gene_9110]]
+
*** [[Tiso_gene_6457]]
+
*** [[Tiso_gene_6459]]
+
*** [[Tiso_gene_14796]]
+
*** [[Tiso_gene_17566]]
+
*** [[Tiso_gene_6458]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
+
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-33090}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=stachyose degradation}}
+
{{#set: common name=galactose-3-o-sulfotransferase_2-like}}
{{#set: reaction found=7}}
+
{{#set: ec number=EC-2.8.2.11}}
{{#set: total reaction=7}}
+
{{#set: gene associated=Tiso_gene_13030}}
{{#set: completion rate=100.0}}
+
{{#set: in pathway=PWY-7840}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-18301

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • galactose-3-o-sulfotransferase_2-like
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7840, gala-series glycosphingolipids biosynthesis: PWY-7840
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links