Difference between revisions of "FASYN-ELONG-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3422 RXN-3422] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=T...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3422 RXN-3422] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** caffeate_o-methyltransferase
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** fatty acid elongation -- saturated
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''5''' reactions in the full pathway
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[5-HYDROXY-FERULIC-ACID]][c] '''=>''' 1 [[SINAPATE]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
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* [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
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* With common name(s):
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** 6 associated gene(s):
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 5-hydroxyferulate[c] '''=>''' 1 sinapate[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_135]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_6884]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_500]]
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* Gene: [[Tiso_gene_18257]]
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*** [[Tiso_gene_136]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_10876]]
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* Gene: [[Tiso_gene_18971]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
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* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
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** 7 associated gene(s):
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_9885]]
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== Reconstruction information  ==
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*** [[Tiso_gene_13394]]
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* Category: [[orthology]]
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*** [[Tiso_gene_13083]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_135]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_10876]]
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* Category: [[annotation]]
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*** [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_136]]
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*** Tool: [[pathwaytools]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[3-OXOACYL-ACP-SYNTH-RXN]]
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** 9 associated gene(s):
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_19302]]
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*** [[Tiso_gene_5939]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_14485]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_15991]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[ENOYL-ACP-REDUCT-NADH-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_10778]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[ENOYL-ACP-REDUCT-NADPH-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_10876]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R02379 R02379]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=caffeate_o-methyltransferase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-2.1.1.68}}
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{{#set: common name=fatty acid elongation -- saturated}}
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{{#set: gene associated=Tiso_gene_18257|Tiso_gene_18971}}
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{{#set: reaction found=5}}
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{{#set: in pathway=PWY-2181}}
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{{#set: total reaction=5}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:39, 21 March 2018

Pathway FASYN-ELONG-PWY

  • taxonomic range:
  • common name:
    • fatty acid elongation -- saturated
  • Synonym(s):

Reaction(s) found

5 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=FASYN-ELONG-PWY&oldid=42989"