Difference between revisions of "PWY-7606"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** prolyl_4-hydroxylase
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** docosahexaenoate biosynthesis III (6-desaturase, mammals)
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''14''' reactions found over '''14''' reactions in the full pathway
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** 1 [[PROCOLLAGEN-L-PROLINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c]
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* [[RXN-13442]]
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* With common name(s):
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** 0 associated gene:
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** 1 a [procollagen]-L-proline[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-13443]]
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* Gene: [[Tiso_gene_4246]]
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** 3 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9871]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_13083]]
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* Gene: [[Tiso_gene_18689]]
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*** [[Tiso_gene_9885]]
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** Source: [[orthology-esiliculosus]]
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_18933]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_9035]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-13444]]
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* Gene: [[Tiso_gene_3021]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_13008]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* [[RXN-13445]]
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** Source: [[annotation-experimental_annotation]]
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** 0 associated gene:
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_9636]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_9165]]
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* [[RXN-16082]]
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** Source: [[orthology-esiliculosus]]
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** 0 associated gene:
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* Gene: [[Tiso_gene_6296]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_2158]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-16103]]
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* Gene: [[Tiso_gene_16122]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_9455]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_16842]]
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* [[RXN-16129]]
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** Source: [[orthology-esiliculosus]]
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_17823]]
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*** [[Tiso_gene_9871]]
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_18208]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_292]]
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* [[RXN-16130]]
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** Source: [[orthology-esiliculosus]]
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** 0 associated gene:
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* Gene: [[Tiso_gene_18145]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_9873]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-16131]]
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* Gene: [[Tiso_gene_15328]]
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** 0 associated gene:
−
** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_1468]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_2280]]
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* [[RXN-16132]]
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** Source: [[orthology-esiliculosus]]
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** 0 associated gene:
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* Gene: [[Tiso_gene_19638]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_17593]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-16134]]
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* Gene: [[Tiso_gene_18235]]
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** 1 associated gene(s):
−
** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_18566]]
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* Gene: [[Tiso_gene_15594]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_8652]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-16135]]
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* Gene: [[Tiso_gene_17919]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_9227]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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* [[RXN-16136]]
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== Reconstruction information  ==
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** 0 associated gene:
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* Category: [[orthology]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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* Category: [[annotation]]
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* [[RXN-16137]]
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** Source: [[annotation-in-silico_annotation]]
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** 5 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_17451]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_15327]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_3856]]
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*** [[Tiso_gene_10116]]
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*** [[Tiso_gene_3855]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
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{{#set: taxonomic range=TAX-2759}}
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* UNIPROT:
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{{#set: common name=docosahexaenoate biosynthesis III (6-desaturase, mammals)}}
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** [http://www.uniprot.org/uniprot/P21195 P21195]
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{{#set: reaction found=14}}
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** [http://www.uniprot.org/uniprot/Q10576 Q10576]
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{{#set: total reaction=14}}
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** [http://www.uniprot.org/uniprot/P16924 P16924]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P13674 P13674]
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** [http://www.uniprot.org/uniprot/P05307 P05307]
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** [http://www.uniprot.org/uniprot/P09102 P09102]
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** [http://www.uniprot.org/uniprot/P07237 P07237]
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** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
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** [http://www.uniprot.org/uniprot/P04785 P04785]
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** [http://www.uniprot.org/uniprot/P54001 P54001]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=prolyl_4-hydroxylase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.14.11.2}}
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−
{{#set: gene associated=Tiso_gene_4246|Tiso_gene_18689|Tiso_gene_18933|Tiso_gene_9035|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_9636|Tiso_gene_9165|Tiso_gene_6296|Tiso_gene_2158|Tiso_gene_16122|Tiso_gene_9455|Tiso_gene_16842|Tiso_gene_17823|Tiso_gene_18208|Tiso_gene_292|Tiso_gene_18145|Tiso_gene_9873|Tiso_gene_15328|Tiso_gene_1468|Tiso_gene_2280|Tiso_gene_19638|Tiso_gene_17593|Tiso_gene_18235|Tiso_gene_15594|Tiso_gene_8652|Tiso_gene_17919|Tiso_gene_9227}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:41, 21 March 2018

Pathway PWY-7606

  • taxonomic range:
  • common name:
    • docosahexaenoate biosynthesis III (6-desaturase, mammals)
  • Synonym(s):

Reaction(s) found

14 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7606&oldid=43260"