Difference between revisions of "PWY66-388"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETHFDEHYDROG-NADP-RXN METHYLENETHFDEHYDROG-NADP-RXN] == * direction: ** REVERSIBLE * common...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-388 PWY66-388] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETHFDEHYDROG-NADP-RXN METHYLENETHFDEHYDROG-NADP-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-388 PWY66-388] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** ORF
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** fatty acid α-oxidation III
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* ec number:
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** [http://enzyme.expasy.org/EC/1.5.1.5 EC-1.5.1.5]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''7''' reactions in the full pathway
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** 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[5-10-METHENYL-THF-GLU-N]][c]
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* [[CERAMIDASE-YEAST-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 NADP+[c] '''<=>''' 1 NADPH[c] '''+''' 1 a 5,10-methenyltetrahydrofolate[c]
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*** [[Tiso_gene_14341]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN66-474]]
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* Gene: [[Tiso_gene_6004]]
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** 0 associated gene:
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** Source: [[annotation-in-silico_annotation]]
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** 2 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_432]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN66-476]]
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== Pathways  ==
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** 0 associated gene:
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* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
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** 1 reconstruction source(s) associated:
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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* [[RXN66-477]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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** 9 associated gene(s):
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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*** [[Tiso_gene_136]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_500]]
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* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
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*** [[Tiso_gene_9394]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_13394]]
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
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*** [[Tiso_gene_348]]
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** '''7''' reactions found over '''24''' reactions in the full pathway
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*** [[Tiso_gene_135]]
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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*** [[Tiso_gene_10876]]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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*** [[Tiso_gene_4191]]
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== Reconstruction information  ==
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*** [[Tiso_gene_7855]]
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* Category: [[orthology]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[manual]]
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*** [[orthology-esiliculosus]]
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** Source: [[manual-primary_network]]
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== Reaction(s) not found ==
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMYL-COA-HYDROLASE-RXN FORMYL-COA-HYDROLASE-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-4042 RXN3O-4042]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-475 RXN66-475]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22812 22812]
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{{#set: common name=fatty acid &alpha;-oxidation III}}
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* LIGAND-RXN:
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{{#set: reaction found=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
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{{#set: total reaction=7}}
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* UNIPROT:
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/P09440 P09440]
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** [http://www.uniprot.org/uniprot/P07245 P07245]
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** [http://www.uniprot.org/uniprot/P11586 P11586]
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** [http://www.uniprot.org/uniprot/P44313 P44313]
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** [http://www.uniprot.org/uniprot/P47259 P47259]
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** [http://www.uniprot.org/uniprot/P54382 P54382]
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** [http://www.uniprot.org/uniprot/O67736 O67736]
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** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
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** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
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** [http://www.uniprot.org/uniprot/P24186 P24186]
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** [http://www.uniprot.org/uniprot/Q60006 Q60006]
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** [http://www.uniprot.org/uniprot/Q27772 Q27772]
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** [http://www.uniprot.org/uniprot/P51696 P51696]
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** [http://www.uniprot.org/uniprot/O65269 O65269]
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** [http://www.uniprot.org/uniprot/O65271 O65271]
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** [http://www.uniprot.org/uniprot/O68031 O68031]
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** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
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** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.5.1.5}}
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{{#set: gene associated=Tiso_gene_6004|Tiso_gene_432}}
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{{#set: in pathway=PWY-1722|PWY-3841|1CMET2-PWY|CODH-PWY|PWY-5497|PWY-2201}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:44, 21 March 2018

Pathway PWY66-388

  • taxonomic range:
  • common name:
    • fatty acid α-oxidation III
  • Synonym(s):

Reaction(s) found

4 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY66-388&oldid=43510"