Difference between revisions of "PWY-6140"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6140 PWY-6140] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6140 PWY-6140] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
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** CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis
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** propionyl-_carboxylase_alpha_chain
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* ec number:
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** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4]
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* Synonym(s):
 
* Synonym(s):
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** CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononic acid biosynthesis
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** CMP-3-deoxy-D-glycero-D-galacto-nonulosonic acid biosynthesis
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** CMP-3-deoxy-D-glycero-D-galacto-nonulosonate biosynthesis
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** CMP-KDN biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''4''' reactions in the full pathway
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** 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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* [[MANNKIN-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 3-methylcrotonyl-CoA[c] '''+''' 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 H+[c] '''+''' 1 3-methylglutaconyl-CoA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
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*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_14499]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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** Source: [[orthology-athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9991 RXN-9991]
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** Source: [[orthology-creinhardtii]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9992 RXN-9992]
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* Gene: [[Tiso_gene_5029]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9993 RXN-9993]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_10675]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13589 13589]
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: common name=CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
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{{#set: common name=CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononic acid biosynthesis|CMP-3-deoxy-D-glycero-D-galacto-nonulosonic acid biosynthesis|CMP-3-deoxy-D-glycero-D-galacto-nonulosonate biosynthesis|CMP-KDN biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q40121 Q40121]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/Q42777 Q42777]
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{{#set: completion rate=25.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial}}
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{{#set: common name=propionyl-_carboxylase_alpha_chain}}
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{{#set: ec number=EC-6.4.1.4}}
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{{#set: gene associated=Tiso_gene_14499|Tiso_gene_5029|Tiso_gene_10675}}
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{{#set: in pathway=LEU-DEG2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:46, 21 March 2018

Pathway PWY-6140

  • taxonomic range:
  • common name:
    • CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis
  • Synonym(s):
    • CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononic acid biosynthesis
    • CMP-3-deoxy-D-glycero-D-galacto-nonulosonic acid biosynthesis
    • CMP-3-deoxy-D-glycero-D-galacto-nonulosonate biosynthesis
    • CMP-KDN biosynthesis

Reaction(s) found

1 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6140&oldid=43706"