Difference between revisions of "PWY-561"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
** ORF
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** superpathway of glyoxylate cycle and fatty acid degradation
* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''5''' reactions found over '''8''' reactions in the full pathway
** 1 [[WATER]][c] '''+''' 1 [[Nucleoside-Diphosphates]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Nucleoside-Monophosphates]][c]
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* [[FUMHYDR-RXN]]
* With common name(s):
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** 2 associated gene(s):
** 1 H2O[c] '''+''' 1 a nucleoside diphosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 a nucleoside 5'-monophosphate[c]
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*** [[Tiso_gene_3691]]
 
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*** [[Tiso_gene_6720]]
== Genes associated with this reaction  ==
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** 6 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
* Gene: [[Tiso_gene_12899]]
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*** [[orthology-esiliculosus]]
** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
*** Assignment: EC-NUMBER
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*** [[orthology-athaliana]]
** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
*** Assignment: EC-NUMBER
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*** [[orthology-creinhardtii]]
* Gene: [[Tiso_gene_13653]]
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* [[GLYOXYLATE-BYPASS]]
** Source: [[annotation-experimental_annotation]]
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** 0 associated gene:
*** Assignment: AUTOMATED-NAME-MATCH
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* [[MALATE-DEH-RXN]]
* Gene: [[Tiso_gene_20236]]
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** 2 associated gene(s):
** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_2323]]
== Pathways  ==
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*** [[Tiso_gene_1990]]
== Reconstruction information  ==
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** 7 reconstruction source(s) associated:
* Category: [[orthology]]
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*** [[annotation-experimental_annotation]]
** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
* Category: [[annotation]]
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*** [[orthology-athaliana]]
** Source: [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
*** Tool: [[pathwaytools]]
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* [[PEPCARBOXYKIN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19475]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[PWY-5136]]
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** 0 associated gene:
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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* METACYC:
** [http://www.genome.jp/dbget-bin/www_bget?R00329 R00329]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=PWY-561 PWY-561]
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
{{#set: common name=ORF}}
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{{#set: common name=superpathway of glyoxylate cycle and fatty acid degradation}}
{{#set: ec number=EC-3.6.1.6}}
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{{#set: reaction found=5}}
{{#set: gene associated=Tiso_gene_12899|Tiso_gene_13653|Tiso_gene_20236}}
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{{#set: total reaction=8}}
{{#set: in pathway=}}
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{{#set: completion rate=63.0}}
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:47, 21 March 2018

Pathway PWY-561

  • taxonomic range:
  • common name:
    • superpathway of glyoxylate cycle and fatty acid degradation
  • Synonym(s):

Reaction(s) found

5 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links