Difference between revisions of "Tiso gene 17568"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutaminase ** aspara...")
(Created page with "Category:Gene == Gene Tiso_gene_17568 == * right end position: ** 2674 * transcription direction: ** NEGATIVE * left end position: ** 917 * centisome position: ** 25.40166...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] ==
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== Gene Tiso_gene_17568 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2674
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* common name:
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* transcription direction:
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** glutaminase
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** NEGATIVE
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** asparagine_synthetase
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* left end position:
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** glutamine_amidotransferase
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** 917
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** ferredoxin-dependent_glutamate_synthase
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* centisome position:
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** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
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** 25.40166   
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** carbamoyl_phosphate_synthetase
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** asparagine_synthetase_domaincontaining_protein_putat
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** glutamate_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
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** [http://enzyme.expasy.org/EC/3.5.1.2 EC-3.5.1.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.7.7.60-RXN]]
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** 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[AMMONIUM]][c]
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* With common name(s):
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** 1 L-glutamine[c] '''+''' 1 H2O[c] '''=>''' 1 L-glutamate[c] '''+''' 1 ammonium[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_11511]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_3434]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_17333]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2973]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4685]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[NONMEVIPP-PWY]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-7560]]
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* Gene: [[Tiso_gene_2581]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17058]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_7495]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6657]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1154]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3435]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_19661]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1773]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4975]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4976]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[GLUTAMINDEG-PWY]], L-glutamine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINDEG-PWY GLUTAMINDEG-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2674}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15889 15889]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=917}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00256 R00256]
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{{#set: centisome position=25.40166    }}
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* UNIPROT:
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{{#set: reaction associated=2.7.7.60-RXN}}
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** [http://www.uniprot.org/uniprot/P10172 P10172]
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{{#set: pathway associated=NONMEVIPP-PWY|PWY-7560}}
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** [http://www.uniprot.org/uniprot/P28492 P28492]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutaminase}}
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{{#set: common name=asparagine_synthetase}}
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{{#set: common name=glutamine_amidotransferase}}
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{{#set: common name=ferredoxin-dependent_glutamate_synthase}}
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{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
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{{#set: common name=glutamate_synthase}}
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{{#set: ec number=EC-3.5.1.38}}
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{{#set: ec number=EC-3.5.1.2}}
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{{#set: gene associated=Tiso_gene_11511|Tiso_gene_3434|Tiso_gene_17333|Tiso_gene_2973|Tiso_gene_4685|Tiso_gene_2581|Tiso_gene_17058|Tiso_gene_7495|Tiso_gene_6657|Tiso_gene_1154|Tiso_gene_3435|Tiso_gene_19661|Tiso_gene_1773|Tiso_gene_4975|Tiso_gene_4976}}
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{{#set: in pathway=GLUTAMINDEG-PWY|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_17568

  • right end position:
    • 2674
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 917
  • centisome position:
    • 25.40166
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17568&oldid=43893"