Difference between revisions of "PWY-5079"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5079 PWY-5079] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5079 PWY-5079] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** ORF
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** L-phenylalanine degradation III
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** transaldolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
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* Synonym(s):
 
* Synonym(s):
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** Ehrlich pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''4''' reactions in the full pathway
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** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
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* [[PHEAMINOTRANS-RXN]]
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* With common name(s):
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** 7 associated gene(s):
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** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
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*** [[Tiso_gene_13892]]
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*** [[Tiso_gene_10680]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_15680]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_17809]]
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* Gene: [[Tiso_gene_17601]]
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*** [[Tiso_gene_17718]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_13538]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_6815]]
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** Source: [[annotation-experimental_annotation]]
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** 4 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_1831]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-7700]]
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*** Assignment: EC-NUMBER
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** 5 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_7649]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_6562]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_5425]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_5424]]
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== Pathways  ==
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*** [[Tiso_gene_6563]]
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** 1 reconstruction source(s) associated:
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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== Reaction(s) not found ==
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.58-RXN 2.6.1.58-RXN]
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHENYLPYRUVATE-DECARBOXYLASE-RXN PHENYLPYRUVATE-DECARBOXYLASE-RXN]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
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{{#set: common name=L-phenylalanine degradation III}}
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* LIGAND-RXN:
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{{#set: common name=Ehrlich pathway}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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{{#set: reaction found=2}}
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* UNIPROT:
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/P17441 P17441]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P17440 P17440]
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** [http://www.uniprot.org/uniprot/P37837 P37837]
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** [http://www.uniprot.org/uniprot/P45055 P45055]
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** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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** [http://www.uniprot.org/uniprot/P34214 P34214]
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** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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** [http://www.uniprot.org/uniprot/P15019 P15019]
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** [http://www.uniprot.org/uniprot/P53228 P53228]
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** [http://www.uniprot.org/uniprot/P51778 P51778]
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** [http://www.uniprot.org/uniprot/P72797 P72797]
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** [http://www.uniprot.org/uniprot/O04894 O04894]
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** [http://www.uniprot.org/uniprot/P78865 P78865]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=transaldolase}}
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{{#set: ec number=EC-2.2.1.2}}
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{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
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{{#set: in pathway=PWY-5723|P185-PWY|P124-PWY|PWY-1861|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:48, 21 March 2018

Pathway PWY-5079

  • taxonomic range:
  • common name:
    • L-phenylalanine degradation III
  • Synonym(s):
    • Ehrlich pathway

Reaction(s) found

2 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5079&oldid=43902"