Difference between revisions of "KDOSYN-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_4492 == * left end position: ** 8290 * transcription direction: ** POSITIVE * right end position: ** 11272 * centisome position: ** 56.0400...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_4492 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
−
* left end position:
+
* direction:
−
** 8290
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** drap_deaminase
−
* right end position:
+
** pseudouridine_synthase_family_protein
−
** 11272
+
** ORF
−
* centisome position:
+
** pseudouridine_synthase
−
** 56.04002   
+
** Transmembrane_protein
 +
** trna-pseudouridine_synthasei
 +
** ribosomal_large_subunit_pseudouridine_synthase_d
 +
** trna_pseudouridinesynthase
 +
** trna_pseudouridine_synthase
 +
** pseudouridylate_synthase
 +
** pseudouridine_synthase_rlu_family_protein
 +
** protein_pus7
 +
** trna_pseudouridine_synthase_a
 +
** pseudouridine
 +
** rna_pseudouridylate_synthase_domain-containing_protein_1
 +
** pseudouridine_synthase_1-like_protein
 +
** trna_pseudouridine_synthase_d
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[SERINE-O-ACETTRAN-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
−
***ec-number
+
* With common name(s):
−
** [[pantograph]]-[[athaliana]]
+
** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
−
** [[pantograph]]-[[synechocystis]]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_3970]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_12093]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18988]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1134]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17799]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4021]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3166]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13557]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5234]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4703]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_7417]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18959]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_12635]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18028]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4020]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19667]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7584]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19622]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1548]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18987]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16656]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15274]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2850]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2988]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11913]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16727]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18936]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2851]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18184]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9833]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10567]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17745]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3154]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_582]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11842]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_178]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5651]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_17798]]
−
** [[pantograph]]-[[creinhardtii]]
+
** IN-SILICO_ANNOTATION
−
== Pathways associated ==
+
***EC-NUMBER
−
* [[CYSTSYN-PWY]]
+
== Pathways  ==
−
* [[PWY-7274]]
+
== Reconstruction information  ==
−
* [[PWY-6936]]
+
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=8290}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
−
{{#set: right end position=11272}}
+
* UNIPROT:
−
{{#set: centisome position=56.04002    }}
+
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
−
{{#set: reaction associated=SERINE-O-ACETTRAN-RXN}}
+
** [http://www.uniprot.org/uniprot/P47428 P47428]
−
{{#set: pathway associated=CYSTSYN-PWY|PWY-7274|PWY-6936}}
+
** [http://www.uniprot.org/uniprot/P45291 P45291]
 +
** [http://www.uniprot.org/uniprot/Q45557 Q45557]
 +
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
 +
** [http://www.uniprot.org/uniprot/P53167 P53167]
 +
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
 +
** [http://www.uniprot.org/uniprot/P73295 P73295]
 +
** [http://www.uniprot.org/uniprot/P07649 P07649]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=drap_deaminase}}
 +
{{#set: common name=pseudouridine_synthase_family_protein}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=pseudouridine_synthase}}
 +
{{#set: common name=Transmembrane_protein}}
 +
{{#set: common name=trna-pseudouridine_synthasei}}
 +
{{#set: common name=ribosomal_large_subunit_pseudouridine_synthase_d}}
 +
{{#set: common name=trna_pseudouridinesynthase}}
 +
{{#set: common name=trna_pseudouridine_synthase}}
 +
{{#set: common name=pseudouridylate_synthase}}
 +
{{#set: common name=pseudouridine_synthase_rlu_family_protein}}
 +
{{#set: common name=protein_pus7}}
 +
{{#set: common name=trna_pseudouridine_synthase_a}}
 +
{{#set: common name=pseudouridine}}
 +
{{#set: common name=rna_pseudouridylate_synthase_domain-containing_protein_1}}
 +
{{#set: common name=pseudouridine_synthase_1-like_protein}}
 +
{{#set: common name=trna_pseudouridine_synthase_d}}
 +
{{#set: ec number=EC-5.4.99.12}}
 +
{{#set: gene associated=Tiso_gene_3970|Tiso_gene_12093|Tiso_gene_18988|Tiso_gene_1134|Tiso_gene_17799|Tiso_gene_4021|Tiso_gene_3166|Tiso_gene_13557|Tiso_gene_5234|Tiso_gene_4703|Tiso_gene_7417|Tiso_gene_18959|Tiso_gene_12635|Tiso_gene_18028|Tiso_gene_4020|Tiso_gene_19667|Tiso_gene_7584|Tiso_gene_19622|Tiso_gene_1548|Tiso_gene_18987|Tiso_gene_16656|Tiso_gene_15274|Tiso_gene_2850|Tiso_gene_2988|Tiso_gene_11913|Tiso_gene_16727|Tiso_gene_18936|Tiso_gene_2851|Tiso_gene_18184|Tiso_gene_9833|Tiso_gene_10567|Tiso_gene_17745|Tiso_gene_3154|Tiso_gene_582|Tiso_gene_11842|Tiso_gene_178|Tiso_gene_5651|Tiso_gene_17798}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:26, 10 January 2018

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • drap_deaminase
    • pseudouridine_synthase_family_protein
    • ORF
    • pseudouridine_synthase
    • Transmembrane_protein
    • trna-pseudouridine_synthasei
    • ribosomal_large_subunit_pseudouridine_synthase_d
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
    • pseudouridylate_synthase
    • pseudouridine_synthase_rlu_family_protein
    • protein_pus7
    • trna_pseudouridine_synthase_a
    • pseudouridine
    • rna_pseudouridylate_synthase_domain-containing_protein_1
    • pseudouridine_synthase_1-like_protein
    • trna_pseudouridine_synthase_d
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links














Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=KDOSYN-PWY&oldid=12929"