Difference between revisions of "RXN-14385"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FATTY-ACID-PEROXIDASE-RXN FATTY-ACID-PEROXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14385 RXN-14385] == * direction: ** LEFT-TO-RIGHT * common name: ** cysteine_mitochondrial ** c...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FATTY-ACID-PEROXIDASE-RXN FATTY-ACID-PEROXIDASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14385 RXN-14385] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** cysteine_mitochondrial
 +
** cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.11.1.3 EC-1.11.1.3]
+
** [http://enzyme.expasy.org/EC/2.8.1.7 EC-2.8.1.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PALMITATE]][c] '''+''' 2 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 3 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-388]][c]
+
** 1 [[CD-S-SP-Complex]][c] '''+''' 1 [[CYS]][c] '''=>''' 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[S-CD-S-SP-Complex]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 palmitate[c] '''+''' 2 hydrogen peroxide[c] '''+''' 1 H+[c] '''=>''' 3 H2O[c] '''+''' 1 CO2[c] '''+''' 1 pentadecanal[c]
+
** 1 a [cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] '''+''' 1 L-cysteine[c] '''=>''' 1 L-alanine[c] '''+''' 1 an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_11478]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4284]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14710]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23960 23960]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01703 R01703]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.11.1.3}}
+
{{#set: common name=cysteine_mitochondrial}}
−
{{#set: in pathway=}}
+
{{#set: common name=cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: ec number=EC-2.8.1.7}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: gene associated=Tiso_gene_11478|Tiso_gene_4284|Tiso_gene_14710}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: in pathway=PWY-7250}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:50, 21 March 2018

Reaction RXN-14385

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cysteine_mitochondrial
    • cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] + 1 L-cysteine[c] => 1 L-alanine[c] + 1 an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7250, [2Fe-2S] iron-sulfur cluster biosynthesis: PWY-7250
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14385&oldid=44068"