Difference between revisions of "Tiso gene 16467"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] == * direction: ** REVERSIBLE * common name: ** ferredoxin-dependent_g...")
(Created page with "Category:Gene == Gene Tiso_gene_16467 == * right end position: ** 4070 * transcription direction: ** POSITIVE * left end position: ** 1876 * centisome position: ** 43.1760...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] ==
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== Gene Tiso_gene_16467 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 4070
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* common name:
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* transcription direction:
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** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
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** POSITIVE
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** glutamate_synthase
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* left end position:
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* ec number:
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** 1876
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** [http://enzyme.expasy.org/EC/1.4.1.4 EC-1.4.1.4]
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* centisome position:
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** 43.176064   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PHENYLALANINE--TRNA-LIGASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[AMMONIUM]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 L-glutamate[c] '''+''' 1 NADP+[c] '''<=>''' 1 NADPH[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 ammonium[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_2581]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_1154]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[TRNA-CHARGING-PWY]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_11511]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=GLUTSYNIII-PWY GLUTSYNIII-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5675]], nitrate reduction V (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5675 PWY-5675]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4070}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11612 11612]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1876}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
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{{#set: centisome position=43.176064    }}
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* UNIPROT:
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{{#set: reaction associated=PHENYLALANINE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P07262 P07262]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/P15111 P15111]
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** [http://www.uniprot.org/uniprot/P28724 P28724]
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** [http://www.uniprot.org/uniprot/P43793 P43793]
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** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
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** [http://www.uniprot.org/uniprot/P00370 P00370]
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** [http://www.uniprot.org/uniprot/P00369 P00369]
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** [http://www.uniprot.org/uniprot/P29507 P29507]
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** [http://www.uniprot.org/uniprot/P28998 P28998]
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** [http://www.uniprot.org/uniprot/P29051 P29051]
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** [http://www.uniprot.org/uniprot/P31026 P31026]
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** [http://www.uniprot.org/uniprot/P39475 P39475]
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** [http://www.uniprot.org/uniprot/P39708 P39708]
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** [http://www.uniprot.org/uniprot/P54387 P54387]
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** [http://www.uniprot.org/uniprot/P54386 P54386]
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** [http://www.uniprot.org/uniprot/P95544 P95544]
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** [http://www.uniprot.org/uniprot/P78804 P78804]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
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{{#set: common name=glutamate_synthase}}
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{{#set: ec number=EC-1.4.1.4}}
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{{#set: gene associated=Tiso_gene_2581|Tiso_gene_1154|Tiso_gene_11511}}
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{{#set: in pathway=GLUTSYNIII-PWY|PWY-5913|PWY-5675|PWY490-3}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:53, 21 March 2018

Gene Tiso_gene_16467

  • right end position:
    • 4070
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1876
  • centisome position:
    • 43.176064
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16467&oldid=44403"