Difference between revisions of "RXN-9534"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoserine_chloroplastic...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534] == * direction: ** LEFT-TO-RIGHT * common name: ** trans dodec-2-enoyl-[acyl-car...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoserine_chloroplastic
+
** trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)
 +
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.3 EC-3.1.3.3]
+
** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
 +
** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[3-P-SERINE]][c] '''=>''' 1 [[SER]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 3-phospho-L-serine[c] '''=>''' 1 L-serine[c] '''+''' 1 phosphate[c]
+
** 1 a (2E)-dodec-2-enoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a dodecanoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_6236]]
+
* Gene: [[Tiso_gene_500]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_10778]]
−
** Source: [[orthology-esiliculosus]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_16271]]
+
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[manual]]
 
* Category: [[manual]]
Line 44: Line 49:
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21208 21208]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00582 R00582]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phosphoserine_chloroplastic}}
+
{{#set: common name=trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)}}
−
{{#set: ec number=EC-3.1.3.3}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: gene associated=Tiso_gene_6236|Tiso_gene_16271}}
+
{{#set: ec number=EC-1.3.1.10}}
−
{{#set: in pathway=SERSYN-PWY}}
+
{{#set: ec number=EC-1.3.1.39}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: gene associated=Tiso_gene_500|Tiso_gene_136|Tiso_gene_10778|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394}}
 +
{{#set: in pathway=PWY-5994}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:53, 21 March 2018

Reaction RXN-9534

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)" cannot be used as a page name in this wiki.






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