Difference between revisions of "Tiso gene 6988"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
(Created page with "Category:Gene == Gene Tiso_gene_6988 == * right end position: ** 5836 * transcription direction: ** POSITIVE * left end position: ** 2254 * centisome position: ** 19.38257...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] ==
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== Gene Tiso_gene_6988 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5836
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** long_chain_acyl-_synthetase
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* left end position:
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** acyl-_synthetase
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** 2254
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** ORF
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* centisome position:
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* ec number:
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** 19.382578   
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[5-NUCLEOTID-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-14018]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 coenzyme A[c] '''+''' 1 icosapentaenoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 icosapentaenoyl-CoA[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_13394]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[AMP-DEPHOSPHORYLATION-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_7855]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[AMP5N]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[CMP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[DAMPH]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[DCMP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[DMPH]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[I5NT]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-14025]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_348]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14026]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-14143]]
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* Gene: [[Tiso_gene_135]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-14227]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_10876]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-5841]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_9394]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-7607]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_500]]
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* Reaction: [[RXN-7609]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_4191]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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* Category: [[annotation]]
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* Reaction: [[TPH]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[UMPP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[X5NT]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[XMPXAN-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-5381]]
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* [[PWY-6607]]
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* [[PWY-7185]]
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* [[PWY-7821]]
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* [[SALVADEHYPOX-PWY]]
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* [[PWY-6596]]
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* [[NAD-BIOSYNTHESIS-II]]
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* [[PWY-6606]]
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* [[PWY-6608]]
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* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5836}}
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{{#set: common name=polyketide_synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: left end position=2254}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: centisome position=19.382578    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|AMP5N|CMP|DAMPH|DCMP|DMPH|I5NT|RXN-14025|RXN-14026|RXN-14143|RXN-14227|RXN-5841|RXN-7607|RXN-7609|TPH|UMPP|X5NT|XMPXAN-RXN}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|PWY-7821|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_13394|Tiso_gene_7855|Tiso_gene_348|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_500|Tiso_gene_4191}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:54, 21 March 2018

Gene Tiso_gene_6988

  • right end position:
    • 5836
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2254
  • centisome position:
    • 19.382578
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6988&oldid=44506"