Difference between revisions of "Tiso gene 8859"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOICASE-RXN ALLANTOICASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** allantoicase...")
(Created page with "Category:Gene == Gene Tiso_gene_8859 == * right end position: ** 9448 * transcription direction: ** POSITIVE * left end position: ** 6880 * centisome position: ** 70.06824...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOICASE-RXN ALLANTOICASE-RXN] ==
+
== Gene Tiso_gene_8859 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 9448
−
* common name:
+
* transcription direction:
−
** allantoicase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/3.5.3.4 EC-3.5.3.4]
+
** 6880
 +
* centisome position:
 +
** 70.06824   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ATPASE-RXN]]
−
** 1 [[ALLANTOATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1091]][c] '''+''' 1 [[UREA]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 allantoate[c] '''+''' 1 H2O[c] '''=>''' 1 S-ureidoglycolate[c] '''+''' 1 urea[c]
+
* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-12195]]
−
* Gene: [[Tiso_gene_15504]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12196]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: ec-number
−
** Source: [[annotation-experimental_annotation]]
+
* Reaction: [[RXN0-5462]]
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-5697]], allantoin degradation to ureidoglycolate I (urea producing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5697 PWY-5697]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
−
** Source: [[annotation-experimental_annotation]]
+
== Pathways associated ==
−
*** Tool: [[pathwaytools]]
+
* [[PWY-7184]]
 +
* [[PWY-7198]]
 +
* [[PWY-6545]]
 +
* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=9448}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11016 11016]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=6880}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02422 R02422]
+
{{#set: centisome position=70.06824    }}
−
* UNIPROT:
+
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
−
** [http://www.uniprot.org/uniprot/P18407 P18407]
+
{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
−
** [http://www.uniprot.org/uniprot/P25335 P25335]
+
−
** [http://www.uniprot.org/uniprot/Q09913 Q09913]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=allantoicase}}
+
−
{{#set: ec number=EC-3.5.3.4}}
+
−
{{#set: gene associated=Tiso_gene_15504}}
+
−
{{#set: in pathway=PWY-5697}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:54, 21 March 2018

Gene Tiso_gene_8859

  • right end position:
    • 9448
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6880
  • centisome position:
    • 70.06824
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8859&oldid=44554"