Difference between revisions of "Tiso gene 8859"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOICASE-RXN ALLANTOICASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** allantoicase...")
(Created page with "Category:Gene == Gene Tiso_gene_8859 == * right end position: ** 9448 * transcription direction: ** POSITIVE * left end position: ** 6880 * centisome position: ** 70.06824...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOICASE-RXN ALLANTOICASE-RXN] ==
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== Gene Tiso_gene_8859 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9448
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* common name:
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* transcription direction:
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** allantoicase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.3.4 EC-3.5.3.4]
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** 6880
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* centisome position:
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** 70.06824   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[ALLANTOATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1091]][c] '''+''' 1 [[UREA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 allantoate[c] '''+''' 1 H2O[c] '''=>''' 1 S-ureidoglycolate[c] '''+''' 1 urea[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* Gene: [[Tiso_gene_15504]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12196]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN0-5462]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-5697]], allantoin degradation to ureidoglycolate I (urea producing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5697 PWY-5697]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9448}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11016 11016]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6880}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02422 R02422]
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{{#set: centisome position=70.06824    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P18407 P18407]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P25335 P25335]
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** [http://www.uniprot.org/uniprot/Q09913 Q09913]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=allantoicase}}
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{{#set: ec number=EC-3.5.3.4}}
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{{#set: gene associated=Tiso_gene_15504}}
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{{#set: in pathway=PWY-5697}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:54, 21 March 2018

Gene Tiso_gene_8859

  • right end position:
    • 9448
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6880
  • centisome position:
    • 70.06824
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8859&oldid=44554"