Difference between revisions of "ISOCHORSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSOPHOSPHOLIPASE-RXN LYSOPHOSPHOLIPASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** lys...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCHORSYN-RXN ISOCHORSYN-RXN] == * direction: ** REVERSIBLE * common name: ** isochorismate_syntha...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSOPHOSPHOLIPASE-RXN LYSOPHOSPHOLIPASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCHORSYN-RXN ISOCHORSYN-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** lysophospholipase
+
** isochorismate_synthase
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.5 EC-3.1.1.5]
+
** [http://enzyme.expasy.org/EC/5.4.4.2 EC-5.4.4.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[2-Lysophosphatidylcholines]][c] '''=>''' 1 [[L-1-GLYCERO-PHOSPHORYLCHOLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Carboxylates]][c]
+
** 1 [[CHORISMATE]][c] '''<=>''' 1 [[ISOCHORISMATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a 1-acyl-sn-glycero-3-phosphocholine[c] '''=>''' 1 sn-glycero-3-phosphocholine[c] '''+''' 1 H+[c] '''+''' 1 a carboxylate[c]
+
** 1 chorismate[c] '''<=>''' 1 isochorismate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_334]]
+
* Gene: [[Tiso_gene_14767]]
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_12478]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_20565]]
+
** Source: [[orthology-synechocystis]]
−
** Source: [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_17551]]
−
* Gene: [[Tiso_gene_12479]]
+
** Source: [[orthology-synechocystis]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_12375]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_8353]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_19778]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_2505]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_15692]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5837]], 1,4-dihydroxy-2-naphthoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5837 PWY-5837]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5901]], 2,3-dihydroxybenzoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5901 PWY-5901]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6406]], salicylate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6406 PWY-6406]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15177 15177]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18985 18985]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02746 R02746]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01717 R01717]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07291 R07291]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O07427 O07427]
+
** [http://www.uniprot.org/uniprot/P23973 P23973]
−
** [http://www.uniprot.org/uniprot/Q7M3V3 Q7M3V3]
+
** [http://www.uniprot.org/uniprot/P44613 P44613]
−
** [http://www.uniprot.org/uniprot/P07000 P07000]
+
** [http://www.uniprot.org/uniprot/P74053 P74053]
−
** [http://www.uniprot.org/uniprot/P0ADA1 P0ADA1]
+
** [http://www.uniprot.org/uniprot/P0AEJ2 P0AEJ2]
−
** [http://www.uniprot.org/uniprot/P39457 P39457]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q03674 Q03674]
+
{{#set: common name=isochorismate_synthase}}
−
** [http://www.uniprot.org/uniprot/P53541 P53541]
+
{{#set: ec number=EC-5.4.4.2}}
−
** [http://www.uniprot.org/uniprot/P78854 P78854]
+
{{#set: gene associated=Tiso_gene_14767|Tiso_gene_17551}}
−
** [http://www.uniprot.org/uniprot/O42970 O42970]
+
{{#set: in pathway=PWY-5837|PWY-5901|PWY-6406}}
−
** [http://www.uniprot.org/uniprot/Q9P327 Q9P327]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=lysophospholipase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-3.1.1.5}}
+
−
{{#set: gene associated=Tiso_gene_334|Tiso_gene_12478|Tiso_gene_20565|Tiso_gene_12479|Tiso_gene_12375|Tiso_gene_8353|Tiso_gene_19778|Tiso_gene_2505|Tiso_gene_15692}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:57, 21 March 2018

Reaction ISOCHORSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isochorismate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 chorismate[c] <=> 1 isochorismate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5837, 1,4-dihydroxy-2-naphthoate biosynthesis: PWY-5837
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5901, 2,3-dihydroxybenzoate biosynthesis: PWY-5901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6406, salicylate biosynthesis I: PWY-6406
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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