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| − | [[Category:Reaction]] | + | [[Category:Metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=R-3-hydroxydodecanoyl-ACPs R-3-hydroxydodecanoyl-ACPs] == |
| − | * direction:
| + | |
| − | ** LEFT-TO-RIGHT
| + | |
| | * common name: | | * common name: |
| − | ** riboflavin_biosynthesis_protein | + | ** a (3R)-3-hydroxydodecanoyl-[acp] |
| − | ** ORF
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | + | ** a β-hydroxydodecanoyl-[acp] |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
| − | * With identifiers:
| + | * [[RXN-9533]] |
| − | ** 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[FORMATE]][c]
| + | == Reaction(s) known to produce the compound == |
| − | * With common name(s):
| + | * [[RXN-9532]] |
| − | ** 1 GTP[c] '''+''' 3 H2O[c] '''=>''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 2 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 formate[c]
| + | == Reaction(s) of unknown directionality == |
| − | | + | |
| − | == Genes associated with this reaction == | + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_14275]] | + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | * Gene: [[Tiso_gene_19932]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_8035]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | == Pathways == | + | |
| − | * [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
| + | |
| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
| + | |
| − | * [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] | + | |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information == | + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * LIGAND-RXN:
| + | {{#set: common name=a (3R)-3-hydroxydodecanoyl-[acp]}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
| + | {{#set: common name=a β-hydroxydodecanoyl-[acp]}} |
| − | * UNIPROT:
| + | {{#set: consumed by=RXN-9533}} |
| − | ** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
| + | {{#set: produced by=RXN-9532}} |
| − | ** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O08315 O08315]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O66679 O66679]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O25484 O25484]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P43525 P43525]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P17620 P17620]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P38066 P38066]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P50139 P50139]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P74104 P74104]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24019 O24019]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P51695 P51695]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P50855 P50855]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=riboflavin_biosynthesis_protein}} | + | |
| − | {{#set: common name=ORF}}
| + | |
| − | {{#set: ec number=EC-3.5.4.25}}
| + | |
| − | {{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932|Tiso_gene_8035}} | + | |
| − | {{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
| + | |
| − | {{#set: reconstruction category=orthology|annotation}} | + | |
| − | {{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
