Difference between revisions of "RXN-15556"

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(Created page with "Category:Gene == Gene Tiso_gene_10757 == * right end position: ** 7399 * transcription direction: ** POSITIVE * left end position: ** 6412 * centisome position: ** 77.0673...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15556 RXN-15556] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_e3_ubiquitin-prote...")
 
Line 1: Line 1:
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[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_10757 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15556 RXN-15556] ==
−
* right end position:
+
* direction:
−
** 7399
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
−
* left end position:
+
** ORF
−
** 6412
+
** ubiquitin_protein_ligase
−
* centisome position:
+
** peptidyl-prolyl_cis-trans_isomerase-like_2
−
** 77.06730   
+
** e3_ubiquitin_ligase
 +
** zinc_finger_protein
 +
** ubiquitin-conjugating_enzyme_e2
 +
** o_ubiquitin_protein_ligase_e3a
 +
** stackhouse_genomicscaffold_453
 +
** f-box_only_protein_11
 +
** ubiquitin-conjugating_enzymee2
 +
** ubiquitin-protein_ligase
 +
** low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
 +
** hect_e3_ubiquitin_ligase
 +
** secretion-regulating_guanine_nucleotide_exchange
 +
** ubiquitinconjugating_enzyme_e2
 +
** auxin_transport_protein_isoform_2
 +
** zinc_n-recogninwd40-like
 +
** ubiquitin-
 +
** f-box_lrr-repeat_protein_2
 +
** brca1-associated_ring_domain_protein_1
 +
** os06g0159400_protein
 +
** ankyrin_repeatdomain-containingprotein-50partial
 +
** phosphoglycerate_mutase_family_protein
 +
** tnf_receptor-associated_factor
 +
** wd_sam_and_u-box_domain_containing_1
 +
** anaphase_promoting_complex_subunit_11
 +
** hrd1-like_protein
 +
** e3_isg15--protein_ligase_herc6
 +
** rni-like_protein
 +
** f-box_lrr-repeat_protein
 +
** regulator_of_chromosome_condensation_rcc1
 +
** probable_e3_ubiquitin-protein_ligase_herc4
 +
** rab_family_gtpase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.2.23 EC-2.3.2.23]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN]]
+
* With identifiers:
 +
** 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[Ubiquitin-carrier-protein-E2-L-cysteine]][c] '''=>''' 1 [[S-ubiquitinyl-UCP-E2-L-cysteine]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c]
 +
* With common name(s):
 +
** 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 an [E2 ubiquitin-conjugating enzyme]-L-cysteine[c] '''=>''' 1 an S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13619]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6946]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14181]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_612]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Reaction: [[RXN-11201]]
+
* Gene: [[Tiso_gene_15097]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8801]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8048]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1586]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20066]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
== Pathways associated ==
+
* Gene: [[Tiso_gene_9662]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1585]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5776]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1592]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4585]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17196]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6910]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8636]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18824]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1427]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2226]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2802]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7719]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6902]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_557]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14360]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4094]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1583]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5502]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15467]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3418]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4461]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15885]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_7308]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9666]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17363]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6903]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3080]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17423]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8637]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8483]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12298]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9575]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16166]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1426]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7955]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3419]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14452]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19647]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14182]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1589]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4484]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3210]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10888]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1590]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14567]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1593]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2932]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_558]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15624]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17030]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14451]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11148]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15884]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12619]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_1591]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12029]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9520]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1587]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1253]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1588]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4460]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1582]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10782]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15214]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4966]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2815]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16642]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17112]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14650]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17517]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17194]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12309]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11823]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3081]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1584]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18752]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3211]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7506]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6901]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17004]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=7399}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=POSITIVE}}
+
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10}}
−
{{#set: left end position=6412}}
+
{{#set: common name=ORF}}
−
{{#set: centisome position=77.06730    }}
+
{{#set: common name=ubiquitin_protein_ligase}}
−
{{#set: reaction associated=HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN|RXN-11201}}
+
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase-like_2}}
 +
{{#set: common name=e3_ubiquitin_ligase}}
 +
{{#set: common name=zinc_finger_protein}}
 +
{{#set: common name=ubiquitin-conjugating_enzyme_e2}}
 +
{{#set: common name=o_ubiquitin_protein_ligase_e3a}}
 +
{{#set: common name=stackhouse_genomicscaffold_453}}
 +
{{#set: common name=f-box_only_protein_11}}
 +
{{#set: common name=ubiquitin-conjugating_enzymee2}}
 +
{{#set: common name=ubiquitin-protein_ligase}}
 +
{{#set: common name=low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like}}
 +
{{#set: common name=hect_e3_ubiquitin_ligase}}
 +
{{#set: common name=secretion-regulating_guanine_nucleotide_exchange}}
 +
{{#set: common name=ubiquitinconjugating_enzyme_e2}}
 +
{{#set: common name=auxin_transport_protein_isoform_2}}
 +
{{#set: common name=zinc_n-recogninwd40-like}}
 +
{{#set: common name=ubiquitin-}}
 +
{{#set: common name=f-box_lrr-repeat_protein_2}}
 +
{{#set: common name=brca1-associated_ring_domain_protein_1}}
 +
{{#set: common name=os06g0159400_protein}}
 +
{{#set: common name=ankyrin_repeatdomain-containingprotein-50partial}}
 +
{{#set: common name=phosphoglycerate_mutase_family_protein}}
 +
{{#set: common name=tnf_receptor-associated_factor}}
 +
{{#set: common name=wd_sam_and_u-box_domain_containing_1}}
 +
{{#set: common name=anaphase_promoting_complex_subunit_11}}
 +
{{#set: common name=hrd1-like_protein}}
 +
{{#set: common name=e3_isg15--protein_ligase_herc6}}
 +
{{#set: common name=rni-like_protein}}
 +
{{#set: common name=f-box_lrr-repeat_protein}}
 +
{{#set: common name=regulator_of_chromosome_condensation_rcc1}}
 +
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4}}
 +
{{#set: common name=rab_family_gtpase}}
 +
{{#set: ec number=EC-2.3.2.23}}
 +
{{#set: gene associated=Tiso_gene_13619|Tiso_gene_6946|Tiso_gene_14181|Tiso_gene_612|Tiso_gene_15097|Tiso_gene_8801|Tiso_gene_17195|Tiso_gene_8048|Tiso_gene_1586|Tiso_gene_20066|Tiso_gene_9662|Tiso_gene_1585|Tiso_gene_5776|Tiso_gene_1592|Tiso_gene_4585|Tiso_gene_17196|Tiso_gene_6910|Tiso_gene_8636|Tiso_gene_16913|Tiso_gene_18824|Tiso_gene_1427|Tiso_gene_2226|Tiso_gene_2802|Tiso_gene_7719|Tiso_gene_6902|Tiso_gene_557|Tiso_gene_14360|Tiso_gene_4094|Tiso_gene_1583|Tiso_gene_5502|Tiso_gene_15467|Tiso_gene_3418|Tiso_gene_4461|Tiso_gene_15885|Tiso_gene_7308|Tiso_gene_9666|Tiso_gene_17363|Tiso_gene_6903|Tiso_gene_3080|Tiso_gene_17423|Tiso_gene_8637|Tiso_gene_8483|Tiso_gene_12298|Tiso_gene_9575|Tiso_gene_16166|Tiso_gene_1426|Tiso_gene_7955|Tiso_gene_3419|Tiso_gene_14452|Tiso_gene_19647|Tiso_gene_12348|Tiso_gene_14182|Tiso_gene_1589|Tiso_gene_4484|Tiso_gene_3210|Tiso_gene_10888|Tiso_gene_1590|Tiso_gene_14567|Tiso_gene_1593|Tiso_gene_2932|Tiso_gene_558|Tiso_gene_15624|Tiso_gene_17030|Tiso_gene_14451|Tiso_gene_11148|Tiso_gene_15884|Tiso_gene_12619|Tiso_gene_1591|Tiso_gene_12029|Tiso_gene_9520|Tiso_gene_1587|Tiso_gene_1253|Tiso_gene_1588|Tiso_gene_4460|Tiso_gene_1582|Tiso_gene_10782|Tiso_gene_15214|Tiso_gene_4966|Tiso_gene_2815|Tiso_gene_16642|Tiso_gene_5622|Tiso_gene_17112|Tiso_gene_14650|Tiso_gene_17517|Tiso_gene_17194|Tiso_gene_12309|Tiso_gene_11823|Tiso_gene_3081|Tiso_gene_1584|Tiso_gene_18752|Tiso_gene_3211|Tiso_gene_7506|Tiso_gene_6901|Tiso_gene_17004}}
 +
{{#set: in pathway=PWY-7511}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction RXN-15556

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
    • ORF
    • ubiquitin_protein_ligase
    • peptidyl-prolyl_cis-trans_isomerase-like_2
    • e3_ubiquitin_ligase
    • zinc_finger_protein
    • ubiquitin-conjugating_enzyme_e2
    • o_ubiquitin_protein_ligase_e3a
    • stackhouse_genomicscaffold_453
    • f-box_only_protein_11
    • ubiquitin-conjugating_enzymee2
    • ubiquitin-protein_ligase
    • low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
    • hect_e3_ubiquitin_ligase
    • secretion-regulating_guanine_nucleotide_exchange
    • ubiquitinconjugating_enzyme_e2
    • auxin_transport_protein_isoform_2
    • zinc_n-recogninwd40-like
    • ubiquitin-
    • f-box_lrr-repeat_protein_2
    • brca1-associated_ring_domain_protein_1
    • os06g0159400_protein
    • ankyrin_repeatdomain-containingprotein-50partial
    • phosphoglycerate_mutase_family_protein
    • tnf_receptor-associated_factor
    • wd_sam_and_u-box_domain_containing_1
    • anaphase_promoting_complex_subunit_11
    • hrd1-like_protein
    • e3_isg15--protein_ligase_herc6
    • rni-like_protein
    • f-box_lrr-repeat_protein
    • regulator_of_chromosome_condensation_rcc1
    • probable_e3_ubiquitin-protein_ligase_herc4
    • rab_family_gtpase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7511, protein ubiquitylation: PWY-7511
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15556&oldid=45529"