Difference between revisions of "Tiso gene 5911"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** prephytoene-diphosphate...")
(Created page with "Category:Gene == Gene Tiso_gene_5911 == * right end position: ** 6643 * transcription direction: ** NEGATIVE * left end position: ** 3327 * centisome position: ** 26.03897...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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== Gene Tiso_gene_5911 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6643
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* transcription direction:
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** NEGATIVE
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* left end position:
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** 3327
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* centisome position:
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** 26.038977   
 
* Synonym(s):
 
* Synonym(s):
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** prephytoene-diphosphate synthase
 
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** PSase
 
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** geranylgeranyl-diphosphate geranylgeranyltransferase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[5-NUCLEOTID-RXN]]
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** 1 [[CPD-464]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12321]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 prephytoene diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 15-cis-phytoene[c]
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* Reaction: [[AMP-DEPHOSPHORYLATION-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[NARP]]
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* Gene: [[Tiso_gene_15914]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[NRPH]]
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== Pathways  ==
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** Source: [[orthology-creinhardtii]]
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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* Reaction: [[RXN-14025]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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*** Assignment: automated-name-match
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN-14026]]
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** Source: [[annotation-in-silico_annotation]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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*** Assignment: automated-name-match
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== Reconstruction information  ==
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* Reaction: [[RXN-14227]]
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* Category: [[orthology]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: automated-name-match
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-5841]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-7607]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-7609]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[XMPXAN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-5381]]
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* [[PWY-6607]]
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* [[PWY-7185]]
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* [[PWY-7821]]
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* [[SALVADEHYPOX-PWY]]
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* [[PWY-6596]]
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* [[NAD-BIOSYNTHESIS-II]]
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* [[PWY-6606]]
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* [[PWY-6608]]
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* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=6643}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=3327}}
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{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: centisome position=26.038977    }}
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{{#set: gene associated=Tiso_gene_15914}}
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|NARP|NRPH|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
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{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|PWY-7821|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:04, 21 March 2018

Gene Tiso_gene_5911

  • right end position:
    • 6643
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3327
  • centisome position:
    • 26.038977
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5911&oldid=45707"