Difference between revisions of "Tiso gene 3107"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9673 RXN-9673] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long_c...")
(Created page with "Category:Gene == Gene Tiso_gene_3107 == * right end position: ** 4192 * transcription direction: ** POSITIVE * left end position: ** 1879 * centisome position: ** 10.77099...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9673 RXN-9673] ==
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== Gene Tiso_gene_3107 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4192
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** long_chain_acyl-_synthetase
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* left end position:
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** acyl-_synthetase
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** 1879
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** ORF
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* centisome position:
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* ec number:
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** 10.770994   
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[FRUCTOKINASE-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[LINOLEIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-18]][c]
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* With common name(s):
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 linoleate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 linoleoyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_348]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_13394]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[GLUCOKIN-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_4191]]
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−
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_7855]]
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* Reaction: [[HEXOKINASE-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_500]]
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−
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9394]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[MANNKIN-RXN]]
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6000]], γ-linolenate biosynthesis II (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6000 PWY-6000]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-3801]]
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* [[PWY-7385]]
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* [[PWY0-1182]]
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* [[SUCROSEUTIL2-PWY]]
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* [[PWY-4101]]
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* [[PWY-2722]]
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* [[PWY-2723]]
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* [[PWY-5384]]
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* [[P124-PWY]]
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* [[TREDEGLOW-PWY]]
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* [[PWY-621]]
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* [[PWY-6992]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-6140]]
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* [[PWY-5661]]
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* [[PWY-7238]]
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* [[GLYCOCAT-PWY]]
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* [[SUCUTIL-PWY]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY-6531]]
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* [[PWY-5514]]
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* [[P122-PWY]]
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* [[PWY-3861]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4192}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33652 33652]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=1879}}
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{{#set: common name=polyketide_synthase}}
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{{#set: centisome position=10.770994    }}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: reaction associated=FRUCTOKINASE-RXN|GLUCOKIN-RXN|HEXOKINASE-RXN|MANNKIN-RXN}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: pathway associated=PWY-3801|PWY-7385|PWY0-1182|SUCROSEUTIL2-PWY|PWY-4101|PWY-2722|PWY-2723|PWY-5384|P124-PWY|TREDEGLOW-PWY|PWY-621|PWY-6992|ANAGLYCOLYSIS-PWY|PWY-6140|PWY-5661|PWY-7238|GLYCOCAT-PWY|SUCUTIL-PWY|GLUCOSE1PMETAB-PWY|PWY-6531|PWY-5514|P122-PWY|PWY-3861}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_348|Tiso_gene_13394|Tiso_gene_4191|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_9394|Tiso_gene_135|Tiso_gene_10876}}
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{{#set: in pathway=PWY-6000}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:05, 21 March 2018

Gene Tiso_gene_3107

  • right end position:
    • 4192
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1879
  • centisome position:
    • 10.770994
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3107&oldid=45892"