Difference between revisions of "2.4.1.224-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_9243 == * right end position: ** 9449 * transcription direction: ** NEGATIVE * left end position: ** 3735 * centisome position: ** 39.35307...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** exostosin-1 ** prob...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_9243 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN] ==
−
* right end position:
+
* direction:
−
** 9449
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** exostosin-1
−
* left end position:
+
** probable_glycosyltransferase
−
** 3735
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/2.4.1.224 EC-2.4.1.224]
−
** 39.353073   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[ATPASE-RXN]]
+
* With identifiers:
−
** Source: [[annotation-in-silico_annotation]]
+
** 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core]][c] '''+''' 1 [[UDP]][c]
−
*** Assignment: ec-number
+
* With common name(s):
−
* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
** 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine[c] '''=>''' 1 H+[c] '''+''' 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP[c]
−
** Source: [[annotation-in-silico_annotation]]
+
 
−
*** Assignment: ec-number
+
== Genes associated with this reaction  ==
−
* Reaction: [[RXN-12195]]
+
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_6495]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
* Reaction: [[RXN-12196]]
+
* Gene: [[Tiso_gene_6496]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
* Reaction: [[RXN0-5462]]
+
== Pathways  ==
 +
* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Tool: [[pathwaytools]]
−
== Pathways associated ==
+
−
* [[PWY-7184]]
+
−
* [[PWY-7198]]
+
−
* [[PWY-6545]]
+
−
* [[PWY-7210]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=9449}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07334 R07334]
−
{{#set: left end position=3735}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: centisome position=39.353073    }}
+
{{#set: common name=exostosin-1}}
−
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
+
{{#set: common name=probable_glycosyltransferase}}
−
{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
+
{{#set: ec number=EC-2.4.1.224}}
 +
{{#set: gene associated=Tiso_gene_6495|Tiso_gene_6496}}
 +
{{#set: in pathway=PWY-6558}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction 2.4.1.224-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • exostosin-1
    • probable_glycosyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 3 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2.4.1.224-RXN&oldid=46074"