Difference between revisions of "Tiso gene 17185"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_17185 == * right end position: ** 3821 * transcription direction: ** NEGATIVE * left end position: ** 183 * centisome position: ** 4.737251...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_17185 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3821
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* common name:
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* transcription direction:
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** threonine_alanine_trna_ligase_subfamily_protein
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** NEGATIVE
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** ORF
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* left end position:
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** alanyl-trna_synthetase
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** 183
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.7 EC-6.1.1.7]
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** 4.737251   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPARTATE--TRNA-LIGASE-RXN]]
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** 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c]
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* With common name(s):
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** 1 L-alanine[c] '''+''' 1 a tRNAala[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-alanyl-[tRNAala][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_2298]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3249]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18607]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[TRNA-CHARGING-PWY]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18609]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19573]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3821}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12540 12540]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=183}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
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{{#set: centisome position=4.737251    }}
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* UNIPROT:
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{{#set: reaction associated=ASPARTATE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P56452 P56452]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/O27718 O27718]
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** [http://www.uniprot.org/uniprot/O34526 O34526]
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** [http://www.uniprot.org/uniprot/P47534 P47534]
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** [http://www.uniprot.org/uniprot/O58035 O58035]
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** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
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** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
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** [http://www.uniprot.org/uniprot/Q57984 Q57984]
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** [http://www.uniprot.org/uniprot/O51238 O51238]
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** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
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** [http://www.uniprot.org/uniprot/O83980 O83980]
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** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
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** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
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** [http://www.uniprot.org/uniprot/O67323 O67323]
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** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
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** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
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** [http://www.uniprot.org/uniprot/P49588 P49588]
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** [http://www.uniprot.org/uniprot/P43815 P43815]
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** [http://www.uniprot.org/uniprot/P50475 P50475]
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** [http://www.uniprot.org/uniprot/P24075 P24075]
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** [http://www.uniprot.org/uniprot/P27866 P27866]
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** [http://www.uniprot.org/uniprot/P35029 P35029]
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** [http://www.uniprot.org/uniprot/P40825 P40825]
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** [http://www.uniprot.org/uniprot/P75368 P75368]
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** [http://www.uniprot.org/uniprot/Q48976 Q48976]
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** [http://www.uniprot.org/uniprot/P00957 P00957]
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** [http://www.uniprot.org/uniprot/P21894 P21894]
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** [http://www.uniprot.org/uniprot/O50189 O50189]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=threonine_alanine_trna_ligase_subfamily_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=alanyl-trna_synthetase}}
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{{#set: ec number=EC-6.1.1.7}}
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{{#set: gene associated=Tiso_gene_2298|Tiso_gene_3249|Tiso_gene_18607|Tiso_gene_18609|Tiso_gene_19573}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:07, 21 March 2018

Gene Tiso_gene_17185

  • right end position:
    • 3821
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 183
  • centisome position:
    • 4.737251
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17185&oldid=46140"